G54047


Basic Information

Item Value
gene id G54047
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23536824 ~ 23537058 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72865
tccggaaccatggtgcaacatagaaccacaagcaatagacaacataaagtgcaggagtgacgacagtgcaacataaaattataaaattataacactaaataacaataaatacaataaatacaaaagacgagacaatttaaagacaggacagtgcagtaccgatacggtataataaagtgtatagtggggataaggtgcagagatgtgtgacatactgtaacatatagaacatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72865 True 235 lncRNA 0.34 1 23536824 23537058

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 1471821 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1482736 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1598376 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1615207 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1651383 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 957257 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1534396 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 1848632 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 1914054 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 1936827 25473885 ~ 25483984 (-)
G54042 NA non-coding downstream 2802 23533671 ~ 23534022 (-)
G54041 NA non-coding downstream 7850 23528135 ~ 23528974 (-)
G54032 LOC107753275,LOC108429368,LOC107654548,LOC107653103,LOC107718535,LOC107582197 non-coding downstream 93758 23441450 ~ 23443066 (-)
G54031 NA non-coding downstream 102552 23434023 ~ 23434272 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding downstream 139777 23396813 ~ 23397047 (-)
G54053 NA non-coding upstream 20442 23557500 ~ 23562932 (-)
G54124 NA non-coding upstream 617545 24154603 ~ 24158935 (-)
G54188 NA non-coding upstream 735933 24272991 ~ 24290777 (-)
G54202 NA non-coding upstream 794550 24331608 ~ 24332070 (-)
G54204 kif5b,LOC107568141,LOC107654561,LOC107753262 non-coding upstream 802953 24340011 ~ 24340825 (-)
G53996 NA other downstream 444849 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2717415 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2749206 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2846402 20621569 ~ 20690422 (-)
G53382 NA other downstream 3686474 19849950 ~ 19850350 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 804342 24341400 ~ 24351936 (-)
svil NA other upstream 1249193 24786251 ~ 24920590 (-)
jcad NA other upstream 1413554 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2012292 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3021348 26558406 ~ 26569939 (-)

Expression


Co-expression Network