G54188


Basic Information

Item Value
gene id G54188
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24272991 ~ 24290777 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73035
CCACCACGCACTTCATTCGACTTAACCTGGGCTTTATTGTCAGATTTCTGTGGGAACTGTCACATATCCCCCCTCACACTTTAATaatatttcatcttttttttttttttttttagatttccaatatttttcaTTCTTTGTCTGCCACCAGGTTGGACTAGAGCTCTGGAGGGTGTTCAGTTCAGCCAGTGGACTGGGCATCGGAGACCTGTGCTCCGGACAAGCCAGGACTGCAGTACTGCAGCCTTGCCCGAGAGCCATCCTCTTCATGGAAGAGACGAAGCAGTATATTCCCAAAGGAAGGCACACCTTTTAACTTGTGGTTTTAGGCCTTAAAATAGTCTGGAGTCTGTTGGTGCGGTTAGAGACTGAGGTTGAGGAGATCGGAGCTGGGCAGCgactcctgctctctctctgtccagcGTGTCTTGGAGCTGAAAAAATATGACACGGTCACAGCAATAATGGACTGTCATTCGCTCATTAGTGAACGCTACACTGACGAGCAACCAAAAACGAACTCTTCCATTACGCGAAGCACAAAGTCGCTTCACCAcaagaactgaaaacaaaaactaacaaaacaggatacaaaaataattgtctgttgttgtacaaataaaataataattaaaaaaaaaaaactaagaacactaaatttaaaggaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73035 True 672 lncRNA 0.42 2 24272991 24290777

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2207988 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2218903 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2334543 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2351374 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 2387550 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 203538 24494315 ~ 24607305 (-)
mtpap NA coding upstream 780677 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 1094913 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 1160335 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 1183108 25473885 ~ 25483984 (-)
G54124 NA non-coding downstream 114056 24154603 ~ 24158935 (-)
G54053 NA non-coding downstream 710059 23557500 ~ 23562932 (-)
G54047 NA non-coding downstream 735933 23536824 ~ 23537058 (-)
G54042 NA non-coding downstream 738969 23533671 ~ 23534022 (-)
G54041 NA non-coding downstream 744017 23528135 ~ 23528974 (-)
G54202 NA non-coding upstream 40831 24331608 ~ 24332070 (-)
G54204 kif5b,LOC107568141,LOC107654561,LOC107753262 non-coding upstream 49234 24340011 ~ 24340825 (-)
G54224 NA non-coding upstream 169002 24459779 ~ 24463132 (-)
G54227 NA non-coding upstream 201924 24492701 ~ 24492970 (-)
LOC111192639 NA non-coding upstream 313248 24604025 ~ 24604660 (-)
G53996 NA other downstream 1181016 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3453582 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 3485373 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 3582569 20621569 ~ 20690422 (-)
G53382 NA other downstream 4422641 19849950 ~ 19850350 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 50623 24341400 ~ 24351936 (-)
svil NA other upstream 495474 24786251 ~ 24920590 (-)
jcad NA other upstream 659835 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 1258573 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 2267629 26558406 ~ 26569939 (-)

Expression


Co-expression Network