G54205 (kif5b,kif5bb,LOC108430866,LOC107753262)


Basic Information

Item Value
gene id G54205
gene name kif5b,kif5bb,LOC108430866,LOC107753262
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24341400 ~ 24351936 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73057
AAAGAGTTTCCGAAGGTTATGGAGAGTCTGCAGCTCCTTAGCCACTGTCTCCTCCAGGCCTTTCAGGTCTTGTCTGGCCTGTTCCCTTCTGTCCTGCATAACCGTGAGGTCGTGCAGTTTGCGGCTCTTATCCTGGTCTGTGGCTTTGAGCTTCTCATGTTCTACCCTAAGGCGCTCCTGTTCCAGCAAGATCTTCTGATTCATATCCTGTAGTTCAGTAATGAGCTTCTCCTTGGTCTCCAGCTCATCTCTCAGGCTGCTGAGCTGTTTCTGATGAGCCTCCCTATGGTTCTGGATCTGCTGCTCCACTGCAGCCTTGACCTCATTGGCTGTCTGAATCTCATTTTCCTTCTCCATAGCATGAACCTTTTCCTGAGCGCTGATTTTGACCAGTTCTTCATTAAGCGAGTCCACATTTTCCTCCAGCTGTCTCTTCTTATGTTCTACATTCTGAAGGTACTCTGTTAGAGACTTAATCTTGGCCTCATGCTGAGAGATGCGTAGTTGGCAGGCAGCCAGCTCCTTCTCGTTCTCGTCCATCTTTTTGTTACTGTCGGCCTGAGCCGCCTCCAGCTGCTTGCTGCGCTTCACCAGGGTCTTCACCTCTGACTTCATCTTACTGATATAGAGCCTGGCCACAGTGAACTCCTCATCAATCAGACCACTGCCTTCATGCTTGATGTCATTGCTACCCACAGCAATACCGATCTCAGCCAGGTCCTTCAGCAGTGAGGACATCATCTCAGTCACCCTCTTCTTCTGGTGATTGCTCATCTCCTTCAGCTTTTGCAGTTCAGAATCTAAAGAAGCTAGAACACCCGATTTCTGGCTGAGTTCTTCACTGAGAGTCTCGAAATCCTTTGTTTTATCCTCCACTTCCTGACTCTTCTGGTCATAGTTGACGGCCAGCTCCTCCAGGGCCTGCAGCACCTCCTTCACCTCCTCTTTAGACGCATCGTTCTCCATCTGCAGACGCGTCAGCTCCGCCTGCAGGTTATCATGGTCCCTCCGTGATGAGGCCAGCAGCTCCTCCTGGTCCAACATCTGCTGCTTCAGTTTCTCAGCCAGCTGAGACTGCTGATTTATCTCATCATCCTTGTCGTCCAGTTGTTTGTAGAGTTTGGCCAGCTCAGCCTCGCACTTGTCTCTCTCAGAGTCAGTCAGACGCACTCCAGGGATGTTGGGGGTGGAGGCTATCTTATCATTATTCACGGTGTTGTCCAAAGCCAACACCTCAGCATTGACCTTCTCCTTATCATACTGCTCTTCAATGGGCACATTCTCACCTAgaaacacacatg
>TU73059
AAAGAGTTTCCGAAGGTTATGGAGAGTCTGCAGCTCCTTAGCCACTGTCTCCTCCAGGCCTTTCAGGTCTTGTCTGGCCTGTTCCCTTCTGTCCTGCATAACCGTGAGGTCGTGCAGTTTGCGGCTCTTATCCTGGTCTGTGGCTTTGAGCTTCTCATGTTCTACCCTAAGGCGCTCCTGTTCCAGCAAGATCTTCTGATTCATATCCTGTAGTTCAGTAATGAGCTTCTCCTTGGTCTCCAGCTCATCTCTCAGGCTGCTGAGCTGTTTCTGATGAGCCTCCCTATGGTTCTGGATCTGCTGCTCCACTGCAGCCTTGACCTCATTGGCTGTCTGAATCTCATTTTCCTTCTCCATAGCATGAACCTTTTCCTGAGCGCTGATTTTGACCAGTTCTTCATTAAGCGAGTCCACATTTTCCTCCAGCTGTCTCTTCTTATGTTCTACATTCTGAAGGTACTCTGTTAGAGACTTAATCTTGGCCTCATGCTGAGAGATGCGTAGTTGGCAGGCAGCCAGCTCCTTCTCGTTCTCGTCCATCTTTTTGTTACTGTCGGCCTGAGCCGCCTCCAGCTGCTTGCTGCGCTTCACCAGGGTCTTCACCTCTGACTTCATCTTACTGATATAGAGCCTGGCCACAGTGAACTCCTCATCAATCAGACCACTGCCTTCATGCTTGATGTCATTGCTACCCACAGCAATACCGATCTCAGCCAGGTCCTTCAGCAGTGAGGACATCATCTCAGTCACCCTCTTCTTCTGGTGATTGCTCATCTCCTTCAGCTTTTGCAGTTCAGAATCTAAAGAAGCTAGAACACCCGATTTCTGGCTGAGTTCTTCACTGAGAGTCTCGAAATCCTTTGTTTTATCCTCCACTTCCTGACTCTTCTGGTCATAGTTGACGGCCAGCTCCTCCAGGGCCTGCAGCACCTCCTTCACCTCCTCTTTAGACGCATCGTTCTCCATCTGCAGACGCGTCAGCTCCGCCTGCAGGTTATCATGGTCCCTCCGTGATGAGGCCAGCAGCTCCTCCTGGTCCAACATCTGCTGCTTCAGTTTCTCAGCCAGCTGAGACTGCTGATTTATCTCATCATCCTTGTCGTCCAGTTGTTTGTAGAGTTTGGCCAGCTCAGCCTCGCACTTGTCTCTCTCAGAGTCAGTCAGACGCACTCCAGGGATGTTGGGGGTGGAGGCTATCTTATCATTATTCACGGTGTTGTCCAAAGCCAACACCTCAGCATTGACCTTCTCCTTATCATACTGCTCTTCAATGGGCACATTCTCACcattccTCCAGCGGTTGAGTTCGTTCTCCAGCCAGGTGATGGTGTTCCTCAGCGTTttgttcttctctttttccttctcatATTTCTTCTTCCACTGTTCTGCTGTCAGCTCCACATTCACGCACACTGTATTCTTAATGGTCTTTGCCCTTTGTCCAAACATGAGTGTAGTTTTGGTTTCAGCCTCGTTAAAAGAGGAAGGAGAGCAACAAATGACAATGGTGGTTCTACAGTTTCCACCCAGAGAGTCCTGAAGAATCCTGGTCATCTTACTGTCTCTGTATGGAACATACGTAGTTCCTTCAGCCAGTGCAGAGATGACGTTTCCCAGCGCGGAGAGGgacttattaatgtttttggcTTCATCTAACACAGCTCCTTCAGCTCCCGTCTTACTGACCTTTTCACTACCAGCCAAGTCAACCAGAAACAGTTTCCCACTTAGTTtctgctctgtttgtgtgttctcCTGCTTCACGTTAATCAAGAAGATACTGTGACTCCTGGAGCTGTGCTCATTCATGTTTGTAACCGCCACATGTCTGTTAGATTTGCCCTCATCGATAGTGTCCATCACCTCTTCTGGGCTACAAACAAAGCGCTCAGTGCAAccctgcagaaagagagagggagaaagagagagggag

Function

symbol description
kif5bb Acts upstream of or within bone morphogenesis; cartilage development; and skeletal muscle tissue development. Is expressed in several structures, including digestive system; eye; pleuroperitoneal region; spinal cord neural tube; and trigeminal placode. Orthologous to human KIF5B (kinesin family member 5B).
kif5b Enables identical protein binding activity; microtubule binding activity; and microtubule motor activity. Involved in several processes, including natural killer cell mediated cytotoxicity; positive regulation of protein localization to plasma membrane; and vesicle transport along microtubule. Located in centriolar satellite; cytosol; and vesicle.

NR:

description
PREDICTED: kinesin-1 heavy chain isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73057 False 1301 lncRNA 0.50 11 24345126 24351936
TU73059 True 1933 TUCP 0.49 16 24341400 24351936

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2276397 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2287312 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2402952 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2419783 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 2455959 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 142379 24494315 ~ 24607305 (-)
mtpap NA coding upstream 719518 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 1033754 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 1099176 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 1121949 25473885 ~ 25483984 (-)
G54204 kif5b,LOC107568141,LOC107654561,LOC107753262 non-coding downstream 575 24340011 ~ 24340825 (-)
G54202 NA non-coding downstream 9330 24331608 ~ 24332070 (-)
G54188 NA non-coding downstream 50623 24272991 ~ 24290777 (-)
G54124 NA non-coding downstream 182465 24154603 ~ 24158935 (-)
G54053 NA non-coding downstream 778468 23557500 ~ 23562932 (-)
G54224 NA non-coding upstream 107843 24459779 ~ 24463132 (-)
G54227 NA non-coding upstream 140765 24492701 ~ 24492970 (-)
LOC111192639 NA non-coding upstream 252089 24604025 ~ 24604660 (-)
LOC111192640 NA non-coding upstream 264109 24616045 ~ 24637375 (-)
G54237 NA non-coding upstream 365545 24717481 ~ 24718187 (-)
G53996 NA other downstream 1249425 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3521991 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 3553782 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 3650978 20621569 ~ 20690422 (-)
G53382 NA other downstream 4491050 19849950 ~ 19850350 (-)
svil NA other upstream 434315 24786251 ~ 24920590 (-)
jcad NA other upstream 598676 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 1197414 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 2206470 26558406 ~ 26569939 (-)
ccl28 NA other upstream 2221464 26573400 ~ 26576425 (-)

Expression


Co-expression Network