G54224


Basic Information

Item Value
gene id G54224
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24459779 ~ 24463132 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73080
ACGTCCATGTCAGAAACAGTAGTTAGTCTCAGAATTACATTCAAAATGTGCTGTTCACAATGCATTGCAATGCCAACCCTTCTTAACTTCTGAAGCaattaatatctaatatttattattcttaacGTTTATAATATTAGAGCAATCTCTTCTCACTTTATTGtttatctgctttttttttaacaattggTTCATTAAGTCTTTTGAAGTTTGTAAGGGAATCTGTACACATGCTTTCAAAATCTGGTATCAAAATGGATTTTTACTTCGTGTACAGCCTGAACACCCCCATGCCACTCATATTTCCAGTACCCTCAGTTGATATATTCATGTGGAGACTAGGGTAAGAAGGATAGATAGAAGAAcagggaagaagaagaagaggaaagaaGGGAAGAAAGGGGAGTATCGCTATCACTATTGATTTGAAACAGTAGCGGCAGGACTGGATGCAAACTTGAACGTCTCTGTTTTCAGGTTCCAGTAATGCTAGAGAGGGTaagagatggatagatggagtaAGCAGGGAAAAGGGAATAAAGgatataaaaggaaaaaagtacAGCAACAATGTGGGCGGGgcaaagacagacagaggaaGGAGTTCATCTTTCAACATATTCCTAAATAATTCATGGCCACTGGTCATGGTCACATTTGGTATTTTTTTCTGGTCCTACTGGGCAGTAGGCGTAGGTAACATTGAAACAGCACATTGGTATAAACTGGTACAACCACTGGAAGACACGCAACGCAGTGACGTTGCCAACTGTTCCACAATACATAAACGCTTAATTTCATCCTCAAATAATCAACACAGACGTGACCACAAGCCTGATTGCACACAAGCCATTAATACGGTCTCAGTCCAGTTACAGTGAAGAGTTCCTCAAAAGCTCAGAGCGAGCCGTTCTGAGATCCTATTGGGTGTGAGATGTTGCCAAAAGGAGATGAAAAATCCAGTAATCCAGTAATATCCACTCTTTGAGAGAAATGGACATTTCTTTCCAGTTCTTTCAAAGAATGGTAGTTAGCCTGCAGTCAAAAGGGCAGATGCTAGAAgcaaaaaagttgaaaaagcACATCAGAGTAAGTCACCCCAATCCTCTCAATTCCTGAAAGAGTCCAGTTCTAATACTGACAGTAAGCCATTAGTCATACCTCTTCAGATCAGCCTCGTAAATGACTGCTTTTCCACAGAACAGTAGTCACTGAGAAATAATACTGCCGTCCAGAACAGTCCATTTCCATTGTAAttcaacagcaaaaaaaataataaaatgtccaAAACAAAAACCAAGTGCAGATTAGTGGGATTCTGTGCTGCAATGAATTGCCAGTCCAGTttcagaagctttttttttcagtattcttCAGTATTCACCATACATATACACTTCAAAGGTAAACTTCATATCCCAGAATCCTTAGCCCATATAGCAGTCTCCTTCAAGCCAGCCATACTGGTCCAGAAAGTAGCATATTGTCCAAAATGTCCAATGAGTGAGTTTTCCAAGCCTCAGCAAGAGCACAAATGGAGAATTTTAAACTGTTCACAATACTATCCAGCTTATTCTCAGCCAAGAGCAGAAGCAGCCCCTTCACAGGAAtggtaaccaaaaaaaaaaaatctgtacatCATCAAAAGCCCAAAAAATCATGAAGTGCATAAAGTACCTTTCTATAAACTTGAAATATTTTCAGCCACCATCACAAGCGTCCGTAACTCAGTCACTCGTCTTCTCTTAGTATTTGTTTCTCTACTAAGCTTGGTCCACAGCGAATGAAGCCTGCCTGAAGCCTGCTTTAACATGGTGGATTCTGCGGCGGTCGTGTTTTGGCATGGTGTTCTCTGGACCTTTTTATTAGCAGaaaggaaaagaaaggaaatcCACTCTTCTCCTTTCGATTTTCGGAATTCAcatcgccttgccatgagcatgctggctagTATTTAAcctctcacaagataacaccacacAACTGGCACAGTTACAGTGGACTGAGGCTCATTTACATGCAAATGAAATCAAAGACAAACGTCAGGGTGTTTGATACGGTGATGACAATCTGAGCTCAGTACCAGGATGGACCTTCACTACCTACCCATGTTTTACAGCGCAAAAGCTCTATGGAGAGGATGTGTACACTGACTGTAAATGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73080 True 2165 lncRNA 0.40 3 24459779 24463132

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2394776 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2405691 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2521331 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2538162 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 2574338 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 31183 24494315 ~ 24607305 (-)
mtpap NA coding upstream 608322 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 922558 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 987980 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 1010753 25473885 ~ 25483984 (-)
G54204 kif5b,LOC107568141,LOC107654561,LOC107753262 non-coding downstream 118954 24340011 ~ 24340825 (-)
G54202 NA non-coding downstream 127709 24331608 ~ 24332070 (-)
G54188 NA non-coding downstream 169002 24272991 ~ 24290777 (-)
G54124 NA non-coding downstream 300844 24154603 ~ 24158935 (-)
G54053 NA non-coding downstream 896847 23557500 ~ 23562932 (-)
G54227 NA non-coding upstream 29569 24492701 ~ 24492970 (-)
LOC111192639 NA non-coding upstream 140893 24604025 ~ 24604660 (-)
LOC111192640 NA non-coding upstream 152913 24616045 ~ 24637375 (-)
G54237 NA non-coding upstream 254349 24717481 ~ 24718187 (-)
G54238 NA non-coding upstream 262665 24725797 ~ 24726344 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 107843 24341400 ~ 24351936 (-)
G53996 NA other downstream 1367804 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3640370 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 3672161 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 3769357 20621569 ~ 20690422 (-)
svil NA other upstream 323119 24786251 ~ 24920590 (-)
jcad NA other upstream 487480 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 1086218 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 2095274 26558406 ~ 26569939 (-)
ccl28 NA other upstream 2110268 26573400 ~ 26576425 (-)

Expression


Co-expression Network