G54238


Basic Information

Item Value
gene id G54238
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24725797 ~ 24726344 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73098
tttacaggggttggacaatgaaactgaaacacctgtcattttagtgtgggaggtttcatggctaaattggagcagcctggtgttcaatcttcattaattgcacattgcaccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctggcgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgtttgggtgctaacccggttgtatccaaaaataaattaaaaccacggctgatcaaatcatggcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtggtctaaaaccaggtgtttcagtttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73098 True 548 lncRNA 0.44 1 24725797 24726344

Neighbor

gene id symbol gene type direction distance location
zeb1 zeb1 coding downstream 118492 24494315 ~ 24607305 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2660794 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2671709 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2787349 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2804180 21919529 ~ 21921617 (-)
mtpap NA coding upstream 345110 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 659346 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 724768 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 747541 25473885 ~ 25483984 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 760218 25486562 ~ 25505546 (-)
G54237 NA non-coding downstream 7610 24717481 ~ 24718187 (-)
LOC111192640 NA non-coding downstream 88422 24616045 ~ 24637375 (-)
LOC111192639 NA non-coding downstream 121137 24604025 ~ 24604660 (-)
G54227 NA non-coding downstream 232827 24492701 ~ 24492970 (-)
G54224 NA non-coding downstream 262665 24459779 ~ 24463132 (-)
G54239 NA non-coding upstream 13492 24739836 ~ 24740055 (-)
G54276 NA non-coding upstream 84476 24810820 ~ 24812627 (-)
LOC111192641 NA non-coding upstream 372832 25099176 ~ 25291974 (-)
G54338 NA non-coding upstream 498676 25225020 ~ 25226203 (-)
G54358 snx2 non-coding upstream 607056 25333400 ~ 25346697 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 373861 24341400 ~ 24351936 (-)
G53996 NA other downstream 1633822 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3906388 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 3938179 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 4035375 20621569 ~ 20690422 (-)
svil NA other upstream 59907 24786251 ~ 24920590 (-)
jcad NA other upstream 224268 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 823006 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1832062 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1847056 26573400 ~ 26576425 (-)

Expression


Co-expression Network