G54276


Basic Information

Item Value
gene id G54276
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 24810820 ~ 24812627 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73174
gggcttctttggttgcttgtgccaccaccttgccagtgattctcatagcccCTCTGTTCTGATTGTGCCATTGAAAAATCTCAGTTAAAAGGGTCATATATCCCTAACACTTCCCTCTatccctccagcctaacaagaattatGACACCTCTACCCCTAGAAGTGCACACACAAAAGAGAGGAGTAGGGCTACGTGGTGTAATGGGATTGAGCCTTAGTGCTTTAATTGCATGGCCATTATAAACCAAAAACATTGCCTGATCGTCTCCTTTGTCTCCAATAATGTAGTCATGTAGCTGTCATGTAGTCCTCAGAACTCTATActtttaatacataaatattgACACACCACAAGTCATGACACTGAAGCtaatattgtgtcccatgacttttggcacgacccatagaagctaaagaacgctgcaGACCTCCCTGTTGGATATAAATGTAGAGACTTCTTCATTAAATGTGCATTTAATGATTGATTTTGCCAGAGTTGCTTGTTTGTTCATATGGACAGTtatagccagacactgccagtcacaatcattactacTTTTGCTGTctactgtgagtggtaatgtcttctatgAGGTATTCCCAGTACACAGGTTACACTGTGTATGCTAAATGACCACACaactttgaaaaataaaatgtctcACCCATCACCTTGCCATTCAAGGCACTTTGGCCAGAATTCCACCTCAattacaacttatacagatgtaCGCATTCCCAAACAGTCCCCATAGGTAATACTTGATGATTCATTTTCATACTTCataccatgacttttggcatgtctatGTATTCCACTATTTTGGGGCACTTTACTTAACTTTCCACCATGAAAAAACAGTCTTTTTATtaagttaataaaatatacacagactatatatatatatatatatatatatatatatatatatatatatatatatatatattgctagtAACCTAGTTCCCACAATCAAAATCTGGCACTTTACttggagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73174 True 999 lncRNA 0.38 2 24810820 24812627

Neighbor

gene id symbol gene type direction distance location
zeb1 zeb1 coding downstream 203515 24494315 ~ 24607305 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 2745817 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 2756732 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 2872372 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 2889203 21919529 ~ 21921617 (-)
mtpap NA coding upstream 258827 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 573063 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 638485 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 661258 25473885 ~ 25483984 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 673935 25486562 ~ 25505546 (-)
G54239 NA non-coding downstream 70765 24739836 ~ 24740055 (-)
G54238 NA non-coding downstream 84476 24725797 ~ 24726344 (-)
G54237 NA non-coding downstream 92633 24717481 ~ 24718187 (-)
LOC111192640 NA non-coding downstream 173445 24616045 ~ 24637375 (-)
LOC111192639 NA non-coding downstream 206160 24604025 ~ 24604660 (-)
LOC111192641 NA non-coding upstream 286549 25099176 ~ 25291974 (-)
G54338 NA non-coding upstream 412393 25225020 ~ 25226203 (-)
G54358 snx2 non-coding upstream 520773 25333400 ~ 25346697 (-)
G54360 NA non-coding upstream 529070 25341697 ~ 25343413 (-)
G54448 NA non-coding upstream 711477 25524104 ~ 25525169 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 458884 24341400 ~ 24351936 (-)
G53996 NA other downstream 1718845 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3991411 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 4023202 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 4120398 20621569 ~ 20690422 (-)
jcad NA other upstream 137985 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 736723 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1745779 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1760773 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1948505 26761132 ~ 26779714 (-)

Expression


Co-expression Network