G54358 (snx2)


Basic Information

Item Value
gene id G54358
gene name snx2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25333400 ~ 25346697 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73284
GAATTTCAGCATTGTTGCACAGGAATGTAACGTAAAaaattcatgaattaaaaaaatctgttataaCAATGCTTTAAAACAAAGAATCAACTCAgatattcaatatttaaaaaaaatcaggctaagaggcaaaataaaaaatatatatgcatgtgTATATAGCGTCAGGCAGCGGCACTGGGGGTCCAAGCACTACAGCCCTGTACATTTTTGTGTAAAAGGAGCAAACAAGAAAAGATGTAATCAATTTATGATGATTTTTAACAAAACATGCTCATGCCTAAAACTGAAAGAGATGCAAACACATTCCTCTCAAAGGCTATCCCCTTCCGGATCACTGCCTATGGGGAAAATTATAGATTGACAGATTTGAATCTATGATGCATTGGTTGATTTACAAGAGAcggcaaaaaacaaacagtgaaATGATGATAGGTCCACTGAGGTGCTTGGACCCCTTTAAAAGACAGAGCAGTAGTGTATCAATAAGCAGGGAGTGCAATGCCTACCACCACTGCCAGGATCCCCCATAAGGATGAACAGTAAAGCAGCTGATCTGCTGAAGACTCCAAAAGGGTAAAAAGGAGGAACCGATCAATTAAAAGATTCATAGTGTTTTTATTAGAGTGGTATTTAGGGTCATTAAGTCCGTGCATCCTTTTTTCGCGTGATTATGCTGTacattaaatggcaaaaaaatgtGATCAACAGTCCCGATGCAGGTGCGCAGGGGGTTTGTCGGCTTATGCGATAGCTTTGGCTTCAGGCAGGAATGCTTCCCAATATTTTATCAGCTGCTGCTGTGTATGTACTAGCGACTCTAGATATTTGATGATGACAACTTTGAAGTCCTTCACTCTTTGTTTCTCGAATCTTCCCACTTCCCGGCGAATGTTTTTAGATATCTGCTcgaaatctctctctccctgctgcaCTTTAGCCTCCtccTTTATTTCCTCCTTGGCCTGCTGAAGCTTGTCCGGCTTGTTGGCGTACTGTAGCTTAGCCTCagcctctctcttcctctgcagCATGACCTGGGCATCCTGCCATTTGGACCACGTTTTCATGCGGTGGTCAAACACACCTTTGACAGCGGTGATGAGGCGCACATAGTCCCCCAGCAGCTCAGAGAACAGATAGAAGTCAGCGTAAGCCTGCTCCTGATGCAGCTGATCAATCTTCTCCTCCACTTCAGCCAGCTGAGACAGAGCTCGAGACAGGGCCGTGTGGTCCTCAGAGTTTCCCAGCATAGCAGCGCTCTTCGCGAAGGACGCAGTGTTCACAGATAACTCTTTCCTGTGACACACCAATGACTCCACACTGGCGTGCAGTTTTCTCAGTTGGACGTCAAGGTtctcaaactgctgctgtttctcctcaAACCACGCATCCGATTCATTCATCTTGATTGTCATTTTGTTGACAGCTTCGGCCGCTTTGTTTACCATCCTCAATATTCCGGCCCCACTCAGTGCCTGGGTGCTAACTGCTCGCGGCAGCTCTGTGCTCTCCAGGAACTGAATGACGTCAGGATCCTTCAGCAGTGCGGGGTGATTCACAGTTCTCATCAGGTACCTTTCCAAGGCAGATCTTCTTTTCTCTACAAATTCTGCAGACGACAGATCTTCTTTCCCAACTTTGACCTTGGTCATTCC
>TU73288
aaaacaatttCAGAACATTTACAGAacactgaagttttttttatatatattccaGGAGACAATCCAAAACGTACAATACTAAGCTGAGCTagctcaactaacattattaTTCCAGCCCAGAATTTTTCAGTTtcagattaatttaatttaagtaatgCATGTTGAGAATAAACAAACTTCATCAGtactgttctaatcatgaacGTCTCCACAGTGCTATTCTTATTGCACATTTAACACAAGAGCTAAtgttctaatcattaatttacctatTCAGTGCAAAAATGCCTGTTATTTAATGCcattctaataatatatttacctcagctgtgctattctcTACTCACACAGTCAAGCCAACTAgctacctcagcattgctaattttgtcatagatttacctcagcagtgctaattAGGTAAtgtgtagctagctagctaacttactaaCGAATTTACACAAACCAAGGCAGTCAGACTATTGGTAAACAAagaaatgctaaggctaagctagctagccatCTCAGATAAAGCTACCCTACTACTATGGCTGTTTAAAACAATCCTAATTTTAGTCCGCaatgtgatttaaaataaaggaaCCATTGTTGGGTATAAATTACTCAGTGTTTTCAACTATTTAgccaaaaacattatttttggtGGCGCATCCCTATAAAGAAGTTAGAAGAAAGTTATGGTGCATATTTATTTTGCTTAGTTCACAAAGAAGCTTAAGCCTCAGAGAAACATCTTGTGTGGCCAAtttatgtaaattgtaaattgccTGAATTCATGTAAAGAGCCATTTCTCACAggttatattaaatgtttattatttattttacctccTTTATTTCCTCCTTGGCCTGCTGAAGCTTGTCCGGCTTGTTGGCGTACTGTAGCTTAGCCTCagcctctctcttcctctgcagCATGACCTGGGCATCCTGCCATTTGGACCACGTTTTCATGCGGTGGTCAAACACACCTTTGACAGCGGTGATGAGGCGCACATAGTCCCCCAGCAGCTCAGAGAACAGATAGAAGTCAGCGTAAGCCTGCTCCTGATGCAGCTGATCAATCTTCTCCTCCACTTCAGCCAGCTGAGACAGAGCTCGAGACAGGGCCGTGTGGTCCTCAGAGTTTCCCAGCATAGCAGCGCTCTTCGCGAAGGACGCAGTGTTCACAGATAACTCT

Function

symbol description
snx2 Predicted to enable phosphatidylinositol binding activity. Predicted to act upstream of or within endocytosis and intracellular protein transport. Predicted to be located in cell projection; endosome; and membrane. Predicted to be part of retromer complex. Orthologous to human SNX2 (sorting nexin 2).

NR:

description
sorting nexin-2 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73284 True 1658 lncRNA 0.45 9 25333400 25346697
TU73288 False 1198 lncRNA 0.39 2 25337766 25340880

Neighbor

gene id symbol gene type direction distance location
mtpap NA coding downstream 234296 25071454 ~ 25099104 (-)
zeb1 zeb1 coding downstream 726095 24494315 ~ 24607305 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 3268397 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 3279312 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 3394952 21933269 ~ 21938448 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 38993 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 104415 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 127188 25473885 ~ 25483984 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 139865 25486562 ~ 25505546 (-)
LOC103035606 LOC108441999 coding upstream 163932 25510629 ~ 25520226 (-)
LOC111192641 NA non-coding downstream 41426 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 107197 25225020 ~ 25226203 (-)
G54276 NA non-coding downstream 520773 24810820 ~ 24812627 (-)
G54239 NA non-coding downstream 593345 24739836 ~ 24740055 (-)
G54238 NA non-coding downstream 607056 24725797 ~ 24726344 (-)
G54448 NA non-coding upstream 177407 25524104 ~ 25525169 (-)
trnak-uuu NA non-coding upstream 219577 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 220444 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 220696 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 220948 25567645 ~ 25567717 (-)
jcad NA other downstream 335280 24950612 ~ 24998120 (-)
svil NA other downstream 412810 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 981464 24341400 ~ 24351936 (-)
G53996 NA other downstream 2241425 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4513991 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 202653 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1211709 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1226703 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1414435 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1819989 27166686 ~ 27168510 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_035328 snx2 coding NC_007119.7 CM002892.2 144154 ~ 175343 (+)