G54360


Basic Information

Item Value
gene id G54360
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25341697 ~ 25343413 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73290
tcctgaaattaattaattatttttctgttttcctatatcgccaagtatatcgttatcgtaaaaataccctgaaaaaaatagtaaaagtgAAACTAAGTTACTAATGCATTACACCCTTTTAGATTTAATTCGTAAtgcattaaatgttttattcatgctttattcttattttatatttccttttttattgttattcccTTACATGCttttctctttgtattttctaatttgtaatgCACTTTGAATGATCATTTTgtgtgaaaggtgctatatatgTAAACATGCCTTGCTTCACGAAAATTTGCCTGAAGTATTATTCACATTCATAATCAAAATATACAGTTAAGCCCTGCTGAATATGCAATATAAAAGTCGGCAACAATTCTTAAAGTCATCTCCTTATATCGCACAATATATCAGTATTTTAATTATCAGACACTGAACTAGTGGATGTATTGGTTAACATTCCCACCAACGTAAAGAATGCTTGGAAGTATGTGGGCAACAAGGAGTTGCAACGTAATATATGAAATGAATTGTTACAAACATCTTTATTATAAGAAAATATTTACAATGCTAATAAAGAAATTATGGTGTATAGTGTCGGATGTTCCCAAAGACATATGTGACACACTGAGAGGTGttaaaGCTGGTAAGATTAAATATGACACAAAAACAACCCTAAATACCACAGGATGAcaggatgagaaaaaaaaaaaagattgcttATTAGCTACTACCACTAATGTACActtctacactacactaccacCATCATCACAAGAATCCctccacaaaacaaacaaacatgaatCTAAAAACATACATGAAGATGTGAATTGTAGCTGCGAACAGTAATACGTCAAGTGAAGCACTATTGTGCTCATGTttcattaaaaatgtgaaagtaaGGCAAACAATAAAGAGCTCATTATCAGCATGGGAATATCTGATGCACGTTATGCTAATGGGACAGGTACTTAAAAACCACAGATGatgggagaaagaaaaaagcaaaaaaaaaaaaaaaactcaaatcagAGCCAAGGGTCCTACCTCCTCAATCTCCTTTGTGGGGCATGACAGggaaaatgcaaaaattaaaaGAGGCTGATAATGTTCTGTGGTTAAAGAAATCAATAATTTATGAACTCATCAAGCAGAACAGCGGCTTTAGAGGAGATATGAATGAACTAAAGCAGGAGAAAGGCAGCATGCTTCACAGTCAACATCAGCACCAGGGCTGTCTCTACCAAGTGTTGATGCTGAAAACAACTAGAGGTTTTTGTCGTGGCTCAAGGTTTATTTTCTGAGAAGATTTACAGAGACTGTGGCTTATCTTCTTTACCATAGAGAATAGGGAAATAGGGATgcactaaattaaatatttgcatAAATTTGGCCAAAAGCAGAATAGCAAACATGGTATTTTTTACAGGCTTTTATCAAAATTCTCTCTACTAAATGAATTACATAGTAcactagtgcatcccaaaaacTAGAAtaccattaaaaagttactttatctTCGTAATTTAGGTcaactgtatattatatatatatgcattacacacagagtgatttattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73290 True 1588 lncRNA 0.33 3 25341697 25343413

Neighbor

gene id symbol gene type direction distance location
mtpap NA coding downstream 242593 25071454 ~ 25099104 (-)
zeb1 zeb1 coding downstream 734392 24494315 ~ 24607305 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 3276694 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 3287609 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 3403249 21933269 ~ 21938448 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 42277 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 107699 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 130472 25473885 ~ 25483984 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding upstream 143149 25486562 ~ 25505546 (-)
LOC103035606 LOC108441999 coding upstream 167216 25510629 ~ 25520226 (-)
LOC111192641 NA non-coding downstream 49723 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 115494 25225020 ~ 25226203 (-)
G54276 NA non-coding downstream 529070 24810820 ~ 24812627 (-)
G54239 NA non-coding downstream 601642 24739836 ~ 24740055 (-)
G54238 NA non-coding downstream 615353 24725797 ~ 24726344 (-)
G54448 NA non-coding upstream 180691 25524104 ~ 25525169 (-)
trnak-uuu NA non-coding upstream 222861 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 223728 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 223980 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 224232 25567645 ~ 25567717 (-)
jcad NA other downstream 343577 24950612 ~ 24998120 (-)
svil NA other downstream 421107 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 989761 24341400 ~ 24351936 (-)
G53996 NA other downstream 2249722 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4522288 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 205937 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1214993 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1229987 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1417719 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1823273 27166686 ~ 27168510 (-)

Expression


Co-expression Network