G54448


Basic Information

Item Value
gene id G54448
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25524104 ~ 25525169 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73401
AGTTTGGCATTTAGGGCATATTACACTGAGAAAACATTGCCTGTTCTGGGTATTTCCAGTTGCCCGAACTCCAGATtatcaaatagtctgttgaatttgacaccacattatgaaaatataacTAGTATACTGTGAATAGCCTAAAGAACTTAACATttaatgtacagttttttttttattatgaccctctgaacttggcatttgagaagattaaaggagaataaattgcctgttctgcatatttccagatgccctaaatccagattctcaaatagtct
>TU73402
AGTTTGGCATTTAGGGCATATTACACTGAGAAAACATTGCCTGTTCTGGGTATTTCCAGTTGCCCGAACTCCAGATtatcaaatagtctgttgaatttgacaccacattatgaaaatataacTAGTATACTGTGAATAGCCTAAAGAACTTAACATttaatgtacagtttttttttattatgagcctctgaacttggcatttgagaagattaaaggagaataaattgcctgttctgcatatttctaGATGCCCTAAATCCACATATTCAAATAGTCTGTTAAATTTGACACAAATTATGAAAATTTACATATTAAACTGTGAAAATCTTTAATAACTACAAAgattactgtacagtttattattatgaccctctgaacttggcatttcaGAATATGTCAgtagaataaattgcctgttctgcatatttccagttacCCTAATTCCAGATTGTCAAATAGTCTGTTAAATTTGAcacaaaatcatgaaaacatacCTATTACACTGTGATGAGCCcaaagagctaaaaatattactgtacagttttttttattatgaccctgtgaacttggcatttgagaagattaaagaagaataaattgcctgttctgcatatttccagatgccctaaatccagattctcaaatagtctgttgaatcagacaccacattatgaaaatatacctatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73401 False 278 lncRNA 0.34 2 25524519 25525169
TU73402 True 687 lncRNA 0.32 2 25524104 25525169

Neighbor

gene id symbol gene type direction distance location
LOC103035606 LOC108441999 coding downstream 3878 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 18558 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 40120 25473885 ~ 25483984 (-)
cep120 cep120,zgc:163014,LOC107712640 coding downstream 52138 25451112 ~ 25471966 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding downstream 133397 25385690 ~ 25390707 (-)
LOC103036837 NA coding upstream 6891 25532060 ~ 25540399 (-)
LOC103035302 NA coding upstream 16137 25541306 ~ 25544527 (-)
lrrc2 lrrc2 coding upstream 86953 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 255260 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 569942 26095111 ~ 26529204 (-)
G54358 snx2 non-coding downstream 177407 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 180691 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 232130 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 297901 25225020 ~ 25226203 (-)
G54276 NA non-coding downstream 711477 24810820 ~ 24812627 (-)
trnak-uuu NA non-coding upstream 41105 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 41972 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 42224 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 42476 25567645 ~ 25567717 (-)
trnak-uuu_4 NA non-coding upstream 42728 25567897 ~ 25567969 (-)
jcad NA other downstream 525984 24950612 ~ 24998120 (-)
svil NA other downstream 603514 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1172168 24341400 ~ 24351936 (-)
G53996 NA other downstream 2432129 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4704695 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 24181 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1033237 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1048231 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1235963 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1641517 27166686 ~ 27168510 (-)

Expression


Co-expression Network