fam240a (LOC108441996)


Basic Information

Item Value
gene id fam240a
gene name LOC108441996
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25549350 ~ 25562139 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73420
GTCATCTGATGCAGCATGGTGCACAGTGGGAATTGTGGCACGATTCCACTGCAGCTTCCAAGCACATCTCAGTCATTACTTACACCCCCTGCACAGTGGGTTCTAGGACACACTTGTCTGGACAGGGAGCCGGGAAAGTAATCATCCATTTTAAAGGAGATGAATGCAGCCTTGATTCATGACAAACTGTTCATCAAAACATTCTGGGAGCAAAAAATTGTCAGTCATGTACAGTTGACGGAAAACGAGGAACAGAGGATGAAGAATAGTGCACTGTCAAAGCTCCGTGATGAATGGCTCATAAGACTTGAAAGTCGAACAAAGCATCTCAAGAACTTCCGTGACGCACAGGCCGTAAAACTAACATCAGCCAAGCAAACAGATAAAGAATGATAAGTTGTACATTTCTAATGTAAAATTATCCAAATGTTTCTTAATAATACAGATCAATAAAACATCACAAAA
>XM_022670400.1
TCATTACTTACACCCCCTGCACAGTGGGTTCTAGGACACACTTGTCTGGACAGGGAGCCGGGAAAGTAATCATCCATTTTAAAGGAGATGAATGCAGCCTTGATTCATGACAAACTGTTCATCAAAACATTCTGGGAGCAAAAAATTGTCAGTCATGTACAGTTGACGGAAAACGAGGAACAGAGGATGAAGAATAGTGCACTGTCAAAGCTCCGTGATGAATGGCTCATAAGACTTGAAAGTCGAACAAAGCATCTCAAGAACTTCCGTGACGCACAGGCCGTAAAACTAACATCAGCCAAGCAAACAGATAAAGAATGATAAGTTGTACATTTCTAATGTAAAATTATCCAAATGTTTCTTAATAATACAGATCAATAAAACATCACAAAATATCTCTGCCTCCTCTCTCATTCATATAACATTGTGTCTGTTCAAGAAGCTGGGAAGTCTGGATGTATACAGTAACTTTTTAAGAGCTTAATAAAAATTACTAACCACCAAGACCCAGTAATCAGAAAAGGCAGAGCCCCACACCCTTGTCATCACAGTCCTTTACAACAGATGGTGTGAAGGACAGAAGCAAGTGAATCTGTCTGACTGCCAAAGTCATGTCAGACAAGGACAGCTCAATTTTTTACACCCAGTCAACACAGTTCATTTGTATTTCTGTCTAATACATTTAGGGATGGTCTATTTTATAAAGAACTATTGTTGTTtactaatataaaaacaaaggcaaataaAACTGCAGACATTTCCTTTTCCAAAAGTTCAAGAAATTCATATattctacagtaaaaaaaaaagagcataacatccaataaaaaataaatttaattcttTGGTCCTagcaaaccaaaaacaaaacttagAGCTACCTGcccaaaaaaaatagttgctgACCCCCCATTAATCATTACTTTGGAGTTTGCATATACTCCTTTACATACTTAGCcatcattattttcattatatttacCATCACAACTATAACTATAAATCAGTACACCTAATCTTTGAGGGTGATTGGATTGGTCATCTGATGTTTTgcacttttgtagttttttaatatcttaaacTTTTGGAGATTTTTGTAAAGAAACCTTATTCTGGAAGAATCACAATAAGAAGACAAATCCTATTAAGGGCATAAGAAAGTGTAACTAAAATTGAAACTGGAAACTTCCAacagaaagcaaaaaaataattaattcaatcAAGAGacaactgtattttttattttgggtggggaaaaatgttctaaatgtatGTACATAAATCACTGTAAAAATCATCTTTACCATAAACAGTGAATGTTCCACATGATCAGATAAGTTCACATATCAAAACAAGTGTCACTG

Function

NR:

description
PREDICTED: uncharacterized protein LOC108441996

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73420 False 465 lncRNA 0.41 3 25550321 25562139
XM_022670400.1 True 1364 mRNA 0.34 3 25549350 25562067

Neighbor

gene id symbol gene type direction distance location
LOC103035302 NA coding downstream 4823 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 8951 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 29124 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 43804 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 65366 25473885 ~ 25483984 (-)
lrrc2 lrrc2 coding upstream 49983 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 218290 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 532972 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 1032201 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 1039324 26601463 ~ 26614549 (-)
G54448 NA non-coding downstream 24181 25524104 ~ 25525169 (-)
G54358 snx2 non-coding downstream 202653 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 205937 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 257376 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 323147 25225020 ~ 25226203 (-)
trnak-uuu NA non-coding upstream 4135 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 5002 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 5254 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 5506 25567645 ~ 25567717 (-)
trnak-uuu_4 NA non-coding upstream 5758 25567897 ~ 25567969 (-)
jcad NA other downstream 551230 24950612 ~ 24998120 (-)
svil NA other downstream 628760 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1197414 24341400 ~ 24351936 (-)
G53996 NA other downstream 2457375 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4729941 20817839 ~ 20819409 (-)
LOC103042298 slc35d2 other upstream 996267 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1011261 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1198993 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1604547 27166686 ~ 27168510 (-)
G54873 NA other upstream 1907079 27469218 ~ 27473347 (-)

Expression


Co-expression Network