G54486


Basic Information

Item Value
gene id G54486
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25649454 ~ 25694995 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73463
CTGATGACAAatcagATTGCTACTGATGACAAATCAGATTGCTACTGATGACAAAATGACACTAAATATACTCTGCTCTCTTGTACAACGTTTCACACCCCCTCCACAATCTACTGCTCAGTAGATTCATCCAGCTTCGCTGCAGCTAAAGACAGTGCAGGGCCTTGATTTTACCTACAAGAATCACACAACACAACTCATCTTCCCAGTGAACATGTCCAAATTGTGTTGTCATCCCTCCCTAATGTCATGTGACTATCTAttattccatccatccatccaaaccatCCAATCAatcatctatctgtctcttttccTGAACAAATCCGTACAATTACTGGAGAGCCAGCATCCAGACCTGTGTTCTTCTAACCAACAACATACGAAATCACATTTTGACTACAAATTAAAGcatctgtttatttgtatttattctaatgttatatagtgtTTTACTGTGGAGATCAATAGTAttcactttttatattttcactgCTGCACAAGACTTTTGCAGAGTACAGTACATCCGTGAAAAAGCCCTGTATGTCAAGAGAATCCACCACATTTTCATTCACGAAGACACTAATATAGTTTCCTgtggtttctttctttttgggcGAAAACAATGAGGAATGATTATTGAATGGTTaactttgtaaataaaaaaatatataaataaaaacaacataaaatgaCAATTTGAACTGACATATTGACAGCTTTGCCTAAGCTCACATAGCAATAAAAGTACAAACCAAGAAAACCAGTTTCACTggaatgtttaataaatgtggTGATCTAGAAGAGTCTAGAACTTAGTTTCAGATCACTGATTTTACAGTGCAAAAGCCTGTATTGTATTGCTGTGGAAAACAGAGGGAGATTGGCAGCCAGCCACTGTGAATGTTCTTGAAGTTATTACTCCTCCTGGCATCACTCTGTGCTTCCATAGTGGTTAACATTGCTTGTCGTATCCTGTAAGGTCGTGTGTGAGATTTCCTCTTTGTTTCCCTTGGGCTGAGCCTTGAAGAAGTCTGATACACAGAAAACCTGAAAGTAGGAGAAAAGTGAcagttttataataaagtaaaacaatatGGGTCAGTACACAACACACATTGTTTAACACCATGTAACAATACAGCTTTCGAGATTGATTCTGAATAAATACATCATTATAAACATAGAGgacttttaactttaaatgtaatgtaacctTTAGTTATCTTTGGTGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73463 True 1238 lncRNA 0.37 2 25649454 25694995

Neighbor

gene id symbol gene type direction distance location
lrrc2 lrrc2 coding downstream 28189 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 104927 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 109055 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 129228 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 143908 25486562 ~ 25505546 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 85434 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 400116 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 899345 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 906468 26601463 ~ 26614549 (-)
LOC111192646 NA coding upstream 926662 26621657 ~ 26627863 (-)
G54471 LOC103036292 non-coding downstream 16233 25629795 ~ 25633221 (-)
G54466 LOC103035659,LOC108430319 non-coding downstream 44247 25602417 ~ 25605207 (-)
trnak-uuu_38 NA non-coding downstream 53457 25595925 ~ 25595997 (-)
trnak-uuu_37 NA non-coding downstream 54290 25595092 ~ 25595164 (-)
trnak-uuu_36 NA non-coding downstream 55123 25594259 ~ 25594331 (-)
G54490 NA non-coding upstream 33388 25728383 ~ 25728601 (-)
G54498 NA non-coding upstream 59727 25754722 ~ 25755060 (-)
G54524 NA non-coding upstream 244707 25939702 ~ 25994673 (-)
G54572 NA non-coding upstream 327855 26022850 ~ 26023104 (-)
G54574 NA non-coding upstream 444321 26139316 ~ 26177147 (-)
fam240a LOC108441996 other downstream 87315 25549350 ~ 25562139 (-)
jcad NA other downstream 651334 24950612 ~ 24998120 (-)
svil NA other downstream 728864 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1297518 24341400 ~ 24351936 (-)
G53996 NA other downstream 2557479 23091306 ~ 23091975 (-)
LOC103042298 slc35d2 other upstream 863411 26558406 ~ 26569939 (-)
ccl28 NA other upstream 878405 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1066137 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1471691 27166686 ~ 27168510 (-)
G54873 NA other upstream 1774223 27469218 ~ 27473347 (-)

Expression


Co-expression Network