G54580


Basic Information

Item Value
gene id G54580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26314592 ~ 26320493 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73585
ctcagttaggggtgtgccatatcatatcgtatgcaataagaTCGTATCGtatgcgctcggaggaaagtgtagcgactctgttccgatacatcagctcacagatgccttgtgctgaacgacatcaccttaggagtgatgaagggagagagcacaattggacttgctctctctgggtaagtagatggcgctctttcccctcatcagcCTTAGgctgatgtcga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73585 True 221 lncRNA 0.49 2 26314592 26320493

Neighbor

gene id symbol gene type direction distance location
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 348527 25780429 ~ 25966065 (-)
lrrc2 lrrc2 coding downstream 693327 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 770065 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 774193 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 794366 25510629 ~ 25520226 (-)
ubox5 NA coding upstream 273847 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 280970 26601463 ~ 26614549 (-)
LOC111192646 NA coding upstream 301164 26621657 ~ 26627863 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 320008 26640501 ~ 26643368 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 328046 26648539 ~ 26653586 (-)
G54574 NA non-coding downstream 137445 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 291488 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 319919 25939702 ~ 25994673 (-)
G54498 NA non-coding downstream 559532 25754722 ~ 25755060 (-)
G54490 NA non-coding downstream 585991 25728383 ~ 25728601 (-)
G54592 cdc14b non-coding upstream 225579 26546072 ~ 26551536 (-)
G54613 mrps27 non-coding upstream 351415 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 380103 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 406158 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 428583 26749076 ~ 26749279 (-)
fam240a LOC108441996 other downstream 752453 25549350 ~ 25562139 (-)
jcad NA other downstream 1316472 24950612 ~ 24998120 (-)
svil NA other downstream 1394002 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1962656 24341400 ~ 24351936 (-)
G53996 NA other downstream 3222617 23091306 ~ 23091975 (-)
LOC103042298 slc35d2 other upstream 237913 26558406 ~ 26569939 (-)
ccl28 NA other upstream 252907 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 440639 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 846193 27166686 ~ 27168510 (-)
G54873 NA other upstream 1148725 27469218 ~ 27473347 (-)

Expression


Co-expression Network