ccl28


Basic Information

Item Value
gene id ccl28
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26573400 ~ 26576425 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73608
ATCTATACACTTTCACTCTTATTATCATCATGGAGACCCGAACAGTGAGCATGTTGCTGCTGATTGTGTGTGCAGTCATCATCTTCACCGCCACCACCACAGAGGGAAGCATCCCAGCATGCTGTGTGGAACTTTCAAGGAACATTCCCTGCATGacgttaaaaaaagtaaaaaaatatgacaTTCAGAATGCTGGAGGCTCCTGTGATAGCCGTGCCTTAATACTCTATTTGAAAAACAAGCCGTACTGCGCAGATCCCAAGTTTCTTCCCATCTTAGAGCTTCCAAAAAAGAACAGTCGCAAGTGGCTCAAGCGCTGCAAAAAACTAATGAGCAAAATGTGTGCAGGAGTCTTCAGATGTTCTTCATGTACTTAGTAAATATCAGAAAGCACTTCTATATTTGGCATTCCAGTTTTTGGTGATGAATCAACAACGGCTGTAAAATAATGGCACACCCTGAAATGCCctttttgtaaatgtatttgatGTATGTTCATATTTCCACTTAAAGTTTTCCATGTTGTGCCAagaactgtaataataataataaatggacAAATGATACACTGTGATTATCAATTTA
>TU73609
aaatgtaaaaAGACACACATACCCTAATCATCATCAGCATGTGTTACACATTAATCTCTGTATGTGATGATTCTCCAGGTTAACTTGTTCTTTAAGCTTTTGTaaattacacaaataaatattataaccACTGCATGCTTCATTGCAAAGGCATGTTGATTTCTGTGTTTAGGTGTGCAGGAGTCTTCAGATGTTCTTCATGTACTTAGTAAATATCAGAAAGCACTTCTATATTTGGCATTCCAGTTTTTGGTGATGAATCAACAACGGCTGTAAAATAATGGCACACCCTGAAATGCCctttttgtaaatgtatttgatGTATGTTCATATTTCCACTTAAAGTTTTCCATGTTGTGCCAagaactgtaataataataataaatggacAAATGATACACTGTGATTATCAATTTA
>XM_022670413.1
ATCTATACACTTTCACTCTTATTATCATCATGGAGACCCGAACAGTGAGCATGTTGCTGCTGATTGTGTGTGCAGTCATCATCTTCACCGCCACCACCACAGAGGGAAGCATCCCAGCATGCTGTGTGGAACTTTCAAGGAACATTCCCTGCATGacgttaaaaaaagtaaaaaaatatgacaTTCAGAATGCTGGAGGCTCCTGTGATAGCCGTGCCTTAATACTCTATTTGAAAAACAAGCCGTACTGCGCAGATCCCAAGTTTCTTCCCATCTTAGAGCTTCCAAAAAAGAACAGTCGCAAGTGGCTCAAGCGCTGCAAAAAACTAATGAGCAAAATGTAAAGAGACACACATACCCTAATCATCATCAGCATGTGTTACACATTAATCTCTGTATGTGATGATTCTCCAGGTTAACTTGTTCTTTAAGCTTTTGTaaattacacaaataaatattataaccACTGCA

Function

GO:

id name namespace
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
ko04915 Estrogen signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU73608 True 585 TUCP 0.39 4 26573400 26575743
TU73609 False 417 lncRNA 0.32 2 26573400 26576425
XM_022670413.1 False 471 mRNA 0.40 3 26573682 26575743

Neighbor

gene id symbol gene type direction distance location
fbxl17 fbxl17,LOC107570989 coding downstream 44196 26095111 ~ 26529204 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 607335 25780429 ~ 25966065 (-)
lrrc2 lrrc2 coding downstream 952135 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 1028873 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 1033001 25532060 ~ 25540399 (-)
ubox5 NA coding upstream 17915 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 25038 26601463 ~ 26614549 (-)
LOC111192646 NA coding upstream 45232 26621657 ~ 26627863 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 64076 26640501 ~ 26643368 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 72114 26648539 ~ 26653586 (-)
G54592 cdc14b non-coding downstream 21864 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 252907 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 396253 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 550296 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 578727 25939702 ~ 25994673 (-)
G54613 mrps27 non-coding upstream 95483 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 124171 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 150226 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 172651 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 228176 26804601 ~ 26810668 (-)
LOC103042298 slc35d2 other downstream 3461 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1011261 25549350 ~ 25562139 (-)
jcad NA other downstream 1575280 24950612 ~ 24998120 (-)
svil NA other downstream 1652810 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 2221464 24341400 ~ 24351936 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 184707 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 590261 27166686 ~ 27168510 (-)
G54873 NA other upstream 892793 27469218 ~ 27473347 (-)
G54947 NA other upstream 1152286 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1450314 28026739 ~ 28043251 (-)

Expression


Co-expression Network