G54613 (mrps27)


Basic Information

Item Value
gene id G54613
gene name mrps27
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26671908 ~ 26676623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73630
ACACCACCACGCAGCGAcaaaacctgctgaattaggaagaaaacatggcgacacccctgtcctgactagtgttgcataatgcgccttatattcgggtgcacattatgtatgaaaatagaccagaaaatagacgatAATTGATAAGTGCGAAAAAATAcaagcattttttgtttttcttgtagACTGCATCAGATCTTCTAAATCAAAGTACAGTTCTTTACAACAAGAGTTCACAACTGATGACATGACTCAAACGGTCACTGTATGGTCTTGCTCAAAAACACCACCTGAGCAGTTGTGTGTTTTCTTATACTCACCACTTCTGTAGACAATTTCAAATCCCCAGTATCAgtgcacactctctccataACAGCCAGCGATCGGCCAAGGTAGCCTGGAGTCCAGATCAAGGGCATCTGGTGAAACACAACATGTATTCCTCTGGCCATCTCCACCTTACCAATAAGTGCATGGCCCAGTAACTGAGCACTAATGCCAACAGAGTTCTCCTGCTCCAGTCCAGCCAGCATAAGAGCTGCTCCCACGTTCCTCTCTTCCTGccaGCTGAGGTCAGGcttggttgccaagtatttGCTCAGGGCGAATAGTGATACTATCTGTGTTGTGGGCTGGGTAAAAGCTTCCTGAAGCATCACCTCCTCAACAACCGAGCAGGCTCCCTTGTAGTCTTTATCTTTTAGGTAAGAGTCGATCAGAAGATTGAAGGTGAACTCATCTGGGAACATCCCAAATTGCACCTTGTTCTTGAGTGTATGTATGGCTTTTTCTCTGGCTCCATGTTTAAGACACTGTCTGAACCAGCTGTGGACAGTCCAGTCTCGGAGATAccagcagtttggactgtggcGAAACTTGTATAGGTAGTATTCAGTTTGATCGATTTCCTCTTTTGAAGATATACAGTCTACAGTCCGAGATATTGTGAGAGAACTGACTGGAAACTTTCTCTCATAAGATCTGTCCATTAAGGAGGCCAACTCACCAAGGCTTTGAGGCTCAGTTTGTCTTTGTTCCCACActtttgtgtctgtgtatgCTGCTGAAAGTAGACATCTTCTACCTGTTTCTCTGTGAGCGGAGATTTTCCCCGCAGTTCTGACCGGCAGGAGAAAGCGCTGCAGTACGGAGGCCGCCATGATCGGGTCCTACCATCTCCCTCCTCCAGCAGGGGGGAGACAGTCCTGCCTGAGCTAAACCACACCAGCACCAACCCGAGCAC

Function

symbol description
mrps27 Predicted to be active in mitochondrion. Is expressed in several structures, including head; immature eye; neural plate; pectoral fin bud; and segmental plate. Orthologous to human MRPS27 (mitochondrial ribosomal protein S27).

NR:

description
PREDICTED: 28S ribosomal protein S27, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73630 True 1240 lncRNA 0.47 9 26671908 26676623

Neighbor

gene id symbol gene type direction distance location
LOC103043649 LOC103043649,LOC108430332 coding downstream 18322 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 28540 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 44045 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 57359 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 72586 26594340 ~ 26599322 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 208020 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 342509 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 347999 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 353293 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 364883 27041506 ~ 27049062 (-)
G54592 cdc14b non-coding downstream 120372 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 351415 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 494761 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 648804 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 677235 25939702 ~ 25994673 (-)
G54623 NA non-coding upstream 23973 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 50028 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 72453 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 127978 26804601 ~ 26810668 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding upstream 286312 26962935 ~ 26972993 (-)
ccl28 NA other downstream 95483 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 101969 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1109769 25549350 ~ 25562139 (-)
jcad NA other downstream 1673788 24950612 ~ 24998120 (-)
svil NA other downstream 1751318 24786251 ~ 24920590 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 84509 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 490063 27166686 ~ 27168510 (-)
G54873 NA other upstream 792595 27469218 ~ 27473347 (-)
G54947 NA other upstream 1052088 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1350116 28026739 ~ 28043251 (-)

Expression


Co-expression Network