LOC103024953 (rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483)


Basic Information

Item Value
gene id LOC103024953
gene name rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26761132 ~ 26779714 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73665
TCAGAGCTTTGTGCTCAGCGTACAGCAGTCCGCCGCGTTTTCGCTCTTTGTCCTCAAGGCAACTGCACGGTCCGCCTGAATGTAACGTTAActagatatttttttcttttctttctttctttttttgtagtgGGGAGCGTTTTGAGCCATCTGTATAAAGACTGTTAGACGATACGAGGAACTGAACGATGGTGTTAGTACACGTTGGATACCTGGTTCTTCCAGTTTTCGGCTCAGTACGAAATAGAGTATCGAGGCTGGCTCTACATTCTGCATTATCAGATCTTTGTCGTCCCCCCTCCATTGTGTAGCTAATGATCATCTGCTGCTGTGTGGTGTGGCCTCTGCCTGTTCTCTGCATTTAGCTGTTTTGTGATCCCCTTCTTCATTTCCTCTTTCCATCAGAAGACGGCATTGGTATTTGAGCACCCAAGACTGTACTCCCTTATGTTAAAgactaaaaaaattaattatagcTAACACATTAGAAAAACAAATTGTCTCTTTCTATGTTAAATTGCAGTAGcccatatttatatatatatatatttatattgctaGTAACGTTAGACAAGTGACTCATGTACCTCCCATCCAGCCTTGGTAGCTAGTCAACATGTGTAAATTCCTGTAAAGTGGATGCATTTTGCTGTTCAAATttcacaaaccaaaacaaaaaacacacaaaggtgCATTGTAACCCTTTCTGACTATTTTTTATGTGGACTTCAATTGTTTTCCAATTGGGCTaagaatgataataaaaataaagttatttctCTAGTTTAAAAGAAGCACATGACTTTAAACAGAAGTTTCAAAATGAATTAGAATGAGGCAGaagcaagcaaaaaaaaaaaaaaccacacagaTTTGTTACACTGCACCTGTGTTTATCATCCAGACATGGAGCACATACATGGCtttgaatatatataatgtaaataaagctTACCAATAATGCAAGCCTAAAAAGAAATCACACCAATTAACAAGTAAGCACTTTACCCAATCTCTGCACTAACAGATTCCAAAATGCTATCCATTTCACAGGGATGTTTATTTCCTTGCACTGCTAAAAATATCCTCTATTAGAGTGGAAATGTCTATTGTTTGGTTGTGGTTTCTCTACCTTTTGTTCTGGTAATAGACTTCAATGCATGAATcacattattcatattattttattctacatTGATTAGACTCCAATGTAATCTTTCTGTAGAAAAGATGTACCCTGCTGTACTGTAATGTGCTGTAGCCAACACATCTGCTCATTGGATGCTGCTTTTGTTCTGTTAACCCTGTACGGAGCATGGTGGGCCTTGCCTTTGgtcaatgttgttttatttgttgcatggaattattattatgacacaGATCCACCTATACTAATATTTTTCAATAAAGAATATAGT
>XM_007247211.3
CAGAGACAGCCTCATGTCAGAGCTTTGTGCTCAGCGTACAGCAGTCCGCCGCGTTTTCGCTCTTTGTCCTCAAGGCAACTGCACGGTCCGCCTGAATGTAACGTTAActagatatttttttcttttctttctttctttttttgtagtgGGGAGCGTTTTGAGCCATCTGTATAAAGACTGTTAGACGATACGAGGAACTGAACGATGGTGTTAGTACACGTTGGATACCTGGTTCTTCCAGTTTTCGGCTCAGTACGAAATAGAGGATCTCAGTTTAACAGGCATCAGCATAGCCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCTCAGGCCCAGATCCCTGTTGACTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGGATGAACCCGCACCTCGCCCCGACGCACCAGCCAGCCGCCCCGCTCCATCCGCCCCTCAGCCACATGCCAGCACCACAGTTCCAGGACATCCAAGGCCCCCCTTTCCTACCTCAGGCTTTACACCAGCAATACCTCATCCAGCAGCAGATCCTGGAGGCACAGCACAGGAGGATCCTTCCACAGCCCAGCAGACATGCTCAAGAGAGAACGCCCCACCATCCCCAGACGCTGCGCCCACCATATGATTACGCTCCTTCCATCCACGTCCCTCCTCCGCCACCCGTCCCACAGCAGCCACGCTACCTTGCTGAAGGAACAGACTGGGATTTGAGTGTGGACCCAGGGCTCCCTCACCCACAGTACCATGTCCCTCAGCTCCCTCAGCATTATCAGCACTATTTGGCCTCTCCCAGGCTGCACCACTTTCCCAGGACAGCATCTTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTACCCCTATCCCCAGTTACATCTGTTGACCCTGCAAGGCCTCAATCCCTCTCGCCACGCCACTGCTGTGAGGGAAAGCTACGAGGAGCTCTTACAGCTGGAAGACAGGCTAGGAAATGTGAACCGAGGGGCTGTGCAAACCACCATTGAGAGGTTTACATTCCCTCATAAGTACAAAAAGAGAAGGCCACTGGAGCTGAAAATAGGGATGGACGAGGATGAGCTGGACACAGACGAAAAGTGTACAATATGTCTGTCAATGCTTGAGGATGGAGAGGATGTGAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCCTGTGTGGACCAGTGGCTTGCGACCAATAAGAAATGTCCAATTTGCAGGGTGGACATTGAGACACAGCTGACTCCAGACAGCTGATGTCTCCTGTAGCACTGGTTGAAGCCCTGCCCTTTCTCCCAATCCCTACTTGGGTACTTTGCCAAATGTCTGTCTCTCCATCACCTTTCACCTTTGACCTTGCCTTCTGAGCCAACCGAAGACGTGAAGCAGGTAGGATTAAAGACATACCACAACTTGAGCGAAAAGGGGAAGGAGCGGGAGGATTCCCGGTGGACGAATGTTCGGATCTGCGCGAGCGTCCAAGGCAGCTTTCAGTGGGACTTCAGTGGGCTTTAGCCGAGTCTGTCATCGAGATGGTTCCTATCAAGGTCCCTTGCATGCACCTCCTGTGTATTTAGGACAGCAAGCGCAGCTCCTGGAAGGTCTCGACCACAGATAACCTAAAGCCTTTCCTCCCTCACAATGTTTCAGTCGACAAACGGAAATTACAACCACATTACGACATTAACATCACAAAACTCCAAACCTCCAAACATTAGATGTAGTCAGTTGTGTATTTCAGAGGTGTACTGCCGTCTCTTCCACGGCCTAGGGACGTGCAGTCGATCAactcaatatataaaatattacgaATGAGCGCTACGTGGAAATGATCTGTGAATAGGGATGGTACGGTATGTTGTGTGTCGTTATGAAACCTAATGAGTTGTAGATTGGGGAGCGAAATGGATTTCAGATAAAATCCAAGCTAGAAACACATAAGGATAACCTTGTTCTCACAAGTCAAGTAATCCAACTGTATGAAATGATACTAACAAACAATCCTTAACTGTAATTATCAGAAGTGATGCTTAATGTACTTTCTGTAATCATGGTGACAGCAAGGCCAGGCTTGACTTAAGCTGTGACAGTATGTATTTGTGCTTGTGAAAAATCTCCATGCTTAGAAAAGTATCTTCAAAATGCATGTTCTGTAAGTGGCCGGGGCTTTTGATTTCTTTAAGTTTTCGGTTTCggggttgttttgtttttctttgggaACATAATGGGTAGGATGGATGGTTCGTGCATGAGAGATATCTTACTAATTCTGAAGACACTGTGTTCTCAACTTGTCACTGACGTAACAAAGAGTGAGATGTATACCTTAATGCCTGTAGGACAAGCACACATTCTAATAGCAACAGCCTACTTCTCAGTGTTTCCATTAGCAATGTAAGTGTGTGGTATCGCTTGAACGTACAGTATATGTAGAGTTACTCAGCTAAGAAAGCAGCTCTAACGTCAAATTGTGCATGAAAACCTGTTGCTGCCATTTCTGGAGGAGACGAAAAGGGAGAAAAGCCATTGTTTTATAGATACCAAACATAACTTTTCTAAGCTGTATTTTTGAGTTGATTGTTTTCATTCTTCCTGTTCTGTTTCGTTCgttcttctccttctttttcttcttcttcttcctctttcccCTTTTTCCCTACTATTGATGAATTATGCCAACCTAGCTGTGGGGCTGGTTCAGCTTCTCACCATTTCAAATAAGTAGCTGCAATGCTGGAATAATATTTATTGTTGTCTTAATGTAGCTAGctgttatttttgtaaatgCACTATATTATGAGGTTGCCTGACTTCGATGTGATTGTGAATTTTTTCTCTCGTCCCTTTGCTTATGCATTTGCACTCAGTGACCTGTCTCCTTGACCAGTGCTGAAACGTGTACACTGCGGTCCTCACAGTAAACTCcatccaaaaagaaaaagacagtaGCGTAGCCATACTTCCACCAATCAGCTCCACTTGTATCCACAGCATTAGCTGAACCCTCATCAGTCACGctttaatgtactgtatgtggctTTATGGCTCGGTAGCATTTCTGAAGACGGTTTGGCGACAATGCATTGAGACCCCATAATGCAGTGACCCACATAATGTGCTCGCTTCTGTTTTAACACCAACCTTCCCAGGTGTCCACTTTGAGCATTGTGGCGAGTTGTGCAGGAAAGAcgtggagaactttttattgtATGGAGGCCTGTTTTTATGAGATAGAAGTAGGTTTTCCTGCTTTCGGTTTCTGGCAGCTGTGTATCAGATGTTTCTCATTAAATGTTGAAAGTTTGACTTTTTATCTTGAAGttctttaaagcttttaaaacaaCGAATTGCTAATAAATGACCTTGTTATGATTTACACATGAGATATGGGATTAGTATGGGACAGTGCTCCCACTGACAGTTCTAatcagattattaatgatttttcatGGACTTTTTCAGGAATTTACATACTGCAATCCtgttacttttggcatgttagtaTATCCACTCACTATTTTGAAATTTACAAGATAAAACACTACTATTGCTTTCTTACAAACATAATTTcaacaaaaaatacaacaaactgCACTTTTAAATGCAGGGTTCAATATTATTGAAGAAAATTctcaatgaataaaatattatttcacCCTTAATGATTTTTGGAAAGTCATGTGCCCCAAAGTATGATTGAcgcaaacaataaaaatgattgTTTATTATTCTTCTATTTAACACTATACTTGTAAttgtttgtaattattattcttaacagtaaaagcacttttttccaaattttgagtttagaaga
>XM_007247212.3
CAGAGACAGCCTCATGTCAGAGCTTTGTGCTCAGCGTACAGCAGTCCGCCGCGTTTTCGCTCTTTGTCCTCAAGGCAACTGCACGGTCCGCCTGAATGTAACGTTAActagatatttttttcttttctttctttctttttttgtagtgGGGAGCGTTTTGAGCCATCTGTATAAAGACTGTTAGACGATACGAGGAACTGAACGATGGTGTTAGTACACGTTGGATACCTGGTTCTTCCAGTTTTCGGCTCAGTACGAAATAGAGGATCTCAGTTTAACAGGCATCAGCATAGCCATGCTACCTCTTGCCGGCATTTCCACGTAGGCCCTCAGGCCCAGATCCCTGTTGACTTCCCAATGCCCCATCCAGGACAATCTCAGACGGGGATGAACCCGCACCTCGCCCCGACGCACCAGCCAGCCGCCCCGCTCCATCCGCCCCTCAGCCACATGCCAGCACCACAGTTCCAGGACATCCAAGGCCCCCCTTTCCTACCTCAGGCTTTACACCAGCAATACCTCATCCAGCAGCAGATCCTGGAGGCACAGCACAGGAGGATCCTTCCACAGCCCAGACATGCTCAAGAGAGAACGCCCCACCATCCCCAGACGCTGCGCCCACCATATGATTACGCTCCTTCCATCCACGTCCCTCCTCCGCCACCCGTCCCACAGCAGCCACGCTACCTTGCTGAAGGAACAGACTGGGATTTGAGTGTGGACCCAGGGCTCCCTCACCCACAGTACCATGTCCCTCAGCTCCCTCAGCATTATCAGCACTATTTGGCCTCTCCCAGGCTGCACCACTTTCCCAGGACAGCATCTTCAGCACAAGTGGTTGTCCATGAGATCAGAAACTACCCCTATCCCCAGTTACATCTGTTGACCCTGCAAGGCCTCAATCCCTCTCGCCACGCCACTGCTGTGAGGGAAAGCTACGAGGAGCTCTTACAGCTGGAAGACAGGCTAGGAAATGTGAACCGAGGGGCTGTGCAAACCACCATTGAGAGGTTTACATTCCCTCATAAGTACAAAAAGAGAAGGCCACTGGAGCTGAAAATAGGGATGGACGAGGATGAGCTGGACACAGACGAAAAGTGTACAATATGTCTGTCAATGCTTGAGGATGGAGAGGATGTGAGGAGATTACCCTGCATGCACCTCTTCCATCAGGCCTGTGTGGACCAGTGGCTTGCGACCAATAAGAAATGTCCAATTTGCAGGGTGGACATTGAGACACAGCTGACTCCAGACAGCTGATGTCTCCTGTAGCACTGGTTGAAGCCCTGCCCTTTCTCCCAATCCCTACTTGGGTACTTTGCCAAATGTCTGTCTCTCCATCACCTTTCACCTTTGACCTTGCCTTCTGAGCCAACCGAAGACGTGAAGCAGGTAGGATTAAAGACATACCACAACTTGAGCGAAAAGGGGAAGGAGCGGGAGGATTCCCGGTGGACGAATGTTCGGATCTGCGCGAGCGTCCAAGGCAGCTTTCAGTGGGACTTCAGTGGGCTTTAGCCGAGTCTGTCATCGAGATGGTTCCTATCAAGGTCCCTTGCATGCACCTCCTGTGTATTTAGGACAGCAAGCGCAGCTCCTGGAAGGTCTCGACCACAGATAACCTAAAGCCTTTCCTCCCTCACAATGTTTCAGTCGACAAACGGAAATTACAACCACATTACGACATTAACATCACAAAACTCCAAACCTCCAAACATTAGATGTAGTCAGTTGTGTATTTCAGAGGTGTACTGCCGTCTCTTCCACGGCCTAGGGACGTGCAGTCGATCAactcaatatataaaatattacgaATGAGCGCTACGTGGAAATGATCTGTGAATAGGGATGGTACGGTATGTTGTGTGTCGTTATGAAACCTAATGAGTTGTAGATTGGGGAGCGAAATGGATTTCAGATAAAATCCAAGCTAGAAACACATAAGGATAACCTTGTTCTCACAAGTCAAGTAATCCAACTGTATGAAATGATACTAACAAACAATCCTTAACTGTAATTATCAGAAGTGATGCTTAATGTACTTTCTGTAATCATGGTGACAGCAAGGCCAGGCTTGACTTAAGCTGTGACAGTATGTATTTGTGCTTGTGAAAAATCTCCATGCTTAGAAAAGTATCTTCAAAATGCATGTTCTGTAAGTGGCCGGGGCTTTTGATTTCTTTAAGTTTTCGGTTTCggggttgttttgtttttctttgggaACATAATGGGTAGGATGGATGGTTCGTGCATGAGAGATATCTTACTAATTCTGAAGACACTGTGTTCTCAACTTGTCACTGACGTAACAAAGAGTGAGATGTATACCTTAATGCCTGTAGGACAAGCACACATTCTAATAGCAACAGCCTACTTCTCAGTGTTTCCATTAGCAATGTAAGTGTGTGGTATCGCTTGAACGTACAGTATATGTAGAGTTACTCAGCTAAGAAAGCAGCTCTAACGTCAAATTGTGCATGAAAACCTGTTGCTGCCATTTCTGGAGGAGACGAAAAGGGAGAAAAGCCATTGTTTTATAGATACCAAACATAACTTTTCTAAGCTGTATTTTTGAGTTGATTGTTTTCATTCTTCCTGTTCTGTTTCGTTCgttcttctccttctttttcttcttcttcttcctctttcccCTTTTTCCCTACTATTGATGAATTATGCCAACCTAGCTGTGGGGCTGGTTCAGCTTCTCACCATTTCAAATAAGTAGCTGCAATGCTGGAATAATATTTATTGTTGTCTTAATGTAGCTAGctgttatttttgtaaatgCACTATATTATGAGGTTGCCTGACTTCGATGTGATTGTGAATTTTTTCTCTCGTCCCTTTGCTTATGCATTTGCACTCAGTGACCTGTCTCCTTGACCAGTGCTGAAACGTGTACACTGCGGTCCTCACAGTAAACTCcatccaaaaagaaaaagacagtaGCGTAGCCATACTTCCACCAATCAGCTCCACTTGTATCCACAGCATTAGCTGAACCCTCATCAGTCACGctttaatgtactgtatgtggctTTATGGCTCGGTAGCATTTCTGAAGACGGTTTGGCGACAATGCATTGAGACCCCATAATGCAGTGACCCACATAATGTGCTCGCTTCTGTTTTAACACCAACCTTCCCAGGTGTCCACTTTGAGCATTGTGGCGAGTTGTGCAGGAAAGAcgtggagaactttttattgtATGGAGGCCTGTTTTTATGAGATAGAAGTAGGTTTTCCTGCTTTCGGTTTCTGGCAGCTGTGTATCAGATGTTTCTCATTAAATGTTGAAAGTTTGACTTTTTATCTTGAAGttctttaaagcttttaaaacaaCGAATTGCTAATAAATGACCTTGTTATGATTTACACATGAGATATGGGATTAGTATGGGACAGTGCTCCCACTGACAGTTCTAatcagattattaatgatttttcatGGACTTTTTCAGGAATTTACATACTGCAATCCtgttacttttggcatgttagtaTATCCACTCACTATTTTGAAATTTACAAGATAAAACACTACTATTGCTTTCTTACAAACATAATTTcaacaaaaaatacaacaaactgCACTTTTAAATGCAGGGTTCAATATTATTGAAGAAAATTctcaatgaataaaatattatttcacCCTTAATGATTTTTGGAAAGTCATGTGCCCCAAAGTATGATTGAcgcaaacaataaaaatgattgTTTATTATTCTTCTATTTAACACTATACTTGTAAttgtttgtaattattattcttaacagtaaaagcacttttttccaaattttgagtttagaaga

Function

symbol description
rnf165b Predicted to enable ubiquitin protein ligase activity. Predicted to be active in nucleus. Orthologous to human RNF165 (ring finger protein 165).
rnf165 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in motor neuron axon guidance and positive regulation of BMP signaling pathway. Predicted to act upstream of or within several processes, including forelimb morphogenesis; multicellular organism aging; and nervous system development. Predicted to be part of protein-containing complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: RING finger protein 165-like

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K17821 RNF165; E3 ubiquitin-protein ligase RNF165

RNA

RNA id representative length rna type GC content exon number start site end site
TU73665 False 1418 lncRNA 0.37 2 26776566 26779698
XM_007247211.3 True 3823 mRNA 0.44 8 26761132 26779714
XM_007247212.3 False 3820 mRNA 0.44 8 26761132 26779714

Neighbor

gene id symbol gene type direction distance location
LOC103043649 LOC103043649,LOC108430332 coding downstream 107546 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 117764 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 133269 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 146583 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 161810 26594340 ~ 26599322 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 104929 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 239418 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 244908 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 250202 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 261792 27041506 ~ 27049062 (-)
G54651 NA non-coding downstream 11853 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 26302 26726651 ~ 26734830 (-)
G54623 NA non-coding downstream 59250 26700596 ~ 26701882 (-)
G54613 mrps27 non-coding downstream 84509 26671908 ~ 26676623 (-)
G54592 cdc14b non-coding downstream 209596 26546072 ~ 26551536 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 24887 26804601 ~ 26810668 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding upstream 183221 26962935 ~ 26972993 (-)
G54702 NA non-coding upstream 193854 26973568 ~ 26974092 (-)
G54716 NA non-coding upstream 279023 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 367701 27147415 ~ 27505872 (-)
ccl28 NA other downstream 184707 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 191193 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1198993 25549350 ~ 25562139 (-)
jcad NA other downstream 1763012 24950612 ~ 24998120 (-)
svil NA other downstream 1840542 24786251 ~ 24920590 (-)
G54854 dhx37 other upstream 386972 27166686 ~ 27168510 (-)
G54873 NA other upstream 689504 27469218 ~ 27473347 (-)
G54947 NA other upstream 948997 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1247025 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1373707 28153421 ~ 28157449 (-)

Expression


Co-expression Network