G54656 (LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550)


Basic Information

Item Value
gene id G54656
gene name LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26804601 ~ 26810668 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73680
TACTTGGAATTTTTAATGCGTTTTTCGTTCAATATGtggtcaaataaaataaaactactataTATTCAAAAGAAACACAGCCAGGGGTTGCCAACCATGAGGGCCCTGCCCTCCAATCTGAACATATTCCAGTCATTCTAATccaagcaaaaagaaaaaaaataataataagagaaatACACAAAGATgcaaaacgaaaaaaaaaaaaaactatagtgtgcgtaaaatgtacaatattcCCACCTTTCAACACAGGGCGGGTCTAGTTTATTTCGCTGTAATGAGCTACAACTCTTCTCTTCAttcacagtttcttttttttgtcccaatTCAGGGTTCCATCTTCCAAAGCAGATCCAAAGCTTGGAATGATGTGTTCATGCAAAAGGGGACAAAATGGGCGCAAACAAAATGCGTGAGGTGTTTAAGAATATCACTAACATAAAGAAGCCCCTCTCCTTCAGGACCAAACAAGACATGTACAAGGAATCAGAACAGTGTGGGTAATGGTGGACTATCACTGCTGTTGTTGTCACAGTTGTGAAATTAGGTATGTTGTGAGTAATGCTAAAGAGGCGGGATGACTGGTGAGGTAATAGCTCTGAATTTCCTAGATTTATCTAGCATATGCATCTGTGGATACAATGGGATGTCAATGTGATGCATCAATCCTCAACTGTTCTGGGTCAAAAGGGTTTAAAATAAGAgacttaaatatacatttaatttgtaatttatatcaATGTAAGTGTCAGACGCTATGTTCAGACTGGCAGCCCAAATCCAACAATATTTGGCATATCTATTGAAGATACGTTTTGATGACCAGAAAAGCAAACCCGATATGAATACTTACACAGGTTTgagaaacaaatctgatttaacTGCAGTGTGAGCACaggttaaattacattttagaatTTAAGCTTGGCAAGGTAAAGGAATAAGTAGGGGGGGAAACAAACAAGATGaccaaaaagcacaaaattgctGACTGTATATTGTACCTTGTAAATGAAAAAGTTCTGATGAacgaaaaatatatatctatatatatattctcacttcacttaaacatTGTTGTATACAACAGATGTTCACAGAAATGCTTCACATTctacacaaataaatgaatggatCTGGGCCTCCACAACAAAACCAAAAAGCTTCAAAAGGTGTTGGGCAAAGATGAAAATGGagtagaaaacaaacaaaaaataataattgataaGAGACTTAAACTCAATTAACTCAAATATATCACAAGGGTCCTAGCAGTATGTGCAAGATGTACTGTTTAAATGTGTTGATGCTGGGCCTTACATGTGCTTACATGTAAGCATCACAGTGGAGAGGCCCTTTGGCACCAGAAAGCATAGTACGTAGATTTCTGCAAGACCGGTCTAGGACAGCATAATATGCATTCAAGGCAAATAAGTGTTGACTGACCAGTCATGTATCTTTTAGGAATTAGGAAGAACATGCACAGGTGTCTGTGAGCGGCACCATGATCCGTCTATCACACCCATTTTTACccattttaaaccttttaatcCATTAAATGTGCTGCCTATACTTGCGATGGCCACAACTTTTGTGAACTTTATTAAATGTCACTACAAGTCTAAGAGTTGTATCCAATAGGAGGAAATACATGTCAAATTTCCCCTCCTTAACTCCCACATCCTCAGCTTATCTCCTTGTTTATCCCTCcagtatacaaaaaaaaaaaaattcattctCCATACCTATAAAATTAAAGTGTAAATTTTGAGTTCCCTATCAAACCTCCAGATTGTGAGCTCCTTTTTGCTGATCAGAAGAAGAAATGGAGGCGAGAATGTGAGAGAGCAGCAGAGAGGGGATGAACACTTTGAGGAATTCAGCAGAGAAGACCCCTCCTTTCTTCATAGCTCCAGTCTTTCTCATACTCAAAGAGACCGAACCTGAACGCTTTGGGTGTCGGAACTGGAACTCCTTGGGAGGTATATTTTCAGGCCGACTGGACCAGTCTGACACCCAGCTCTCGCCTTTATTCATGAGGATGTCGTCCTCTCTGTCCTTATCCAGACTGTCGTCCTCTGACTGACAATCTCTCTCACTGGGCATTTCCACATCAAAGGTGATCAGACCTTCATCGTGCTCAGGACTGTGGGGTCTGGGGGGACTGTTACAGGAGGAGCTGCTGGGGCTGGACTCATGTTGGGCGTCCAGCAGGATTTTCTCCATGTCTCCATTATGGATGGAGGAGGATGAAGGGACATGCTCAAGGCCTCCTACCAGGCTCTCCTCCTCCACTTCCTGTACAGCCTGCAGGGGAGTTGAGGACTCTCCTACATTTCCATTGCCGGCAGGGGGGGCCAGGCCAGGGGTCAGCTGCTGGGGGGCTGTCCCCGTGTTCCCATTCAACTCCAACTCCACCCAGG

Function

NR:

description
PREDICTED: BCL2/adenovirus E1B 19 kDa protein-interacting protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73680 True 2426 lncRNA 0.41 5 26804601 26810668

Neighbor

gene id symbol gene type direction distance location
LOC103043649 LOC103043649,LOC108430332 coding downstream 151015 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 161233 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 176738 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 190052 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 205279 26594340 ~ 26599322 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 73975 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 208464 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 213954 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 219248 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 230838 27041506 ~ 27049062 (-)
G54651 NA non-coding downstream 55322 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 69771 26726651 ~ 26734830 (-)
G54623 NA non-coding downstream 102719 26700596 ~ 26701882 (-)
G54613 mrps27 non-coding downstream 127978 26671908 ~ 26676623 (-)
G54592 cdc14b non-coding downstream 253065 26546072 ~ 26551536 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding upstream 152267 26962935 ~ 26972993 (-)
G54702 NA non-coding upstream 162900 26973568 ~ 26974092 (-)
G54716 NA non-coding upstream 248069 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 336747 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 432412 27243080 ~ 27245098 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 24887 26761132 ~ 26779714 (-)
ccl28 NA other downstream 228176 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 234662 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1242462 25549350 ~ 25562139 (-)
jcad NA other downstream 1806481 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 356018 27166686 ~ 27168510 (-)
G54873 NA other upstream 658550 27469218 ~ 27473347 (-)
G54947 NA other upstream 918043 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1216071 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1342753 28153421 ~ 28157449 (-)

Expression


Co-expression Network