G54702


Basic Information

Item Value
gene id G54702
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26973568 ~ 26974092 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73745
GTTAAtgccttttattttaattcatctCAGTAGGTATTTGTCCTTGTTTCACATTGCAGACAAAAGGGCCAGTGGTATATACAacccagagagacagagagagaaaggctggGGAAACTTTACCCACTGACTTAAACGCAGGCTTATTTAATCTGTAAACACTTTCATTCTCATTTTTGTCTAAACTTCTCTTTTAACTTTAGGATGAATTAGGAATTTTTGGGACTGTTTTCCTTGCTGTTAATATAACAACacagccaaaaataaaaaaaaatgtctgttaaattaaatatgttcaTTTTGATTGTGTGGTCACAGTAAGGGGCTTTTTCTTCACActggaaaaaatatgttttccaAATCCCCCAcataaaatatttgttataaATCTTTTATTTAGCAATGATCTGTTGTCTGATAATTTTTATTAATCTGTTAGTTAATTAGTGTTTCTTATTAATCTTGCTTgcagtttaataaatattatatgacCCCTTAATGCTGTGataaaaatttaaacaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73745 True 525 lncRNA 0.30 1 26973568 26974092

Neighbor

gene id symbol gene type direction distance location
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding downstream 53150 26884643 ~ 26920418 (-)
LOC103043649 LOC103043649,LOC108430332 coding downstream 319982 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 330200 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 345705 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 359019 26601463 ~ 26614549 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 45040 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 50530 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 55824 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 67414 27041506 ~ 27049062 (-)
cldn5 cldn5 coding upstream 97786 27071878 ~ 27074018 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 575 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 162900 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 224289 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 238738 26726651 ~ 26734830 (-)
G54623 NA non-coding downstream 271686 26700596 ~ 26701882 (-)
G54716 NA non-coding upstream 84645 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 173323 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 268988 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 437142 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 688234 27662326 ~ 27663868 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 193854 26761132 ~ 26779714 (-)
ccl28 NA other downstream 397143 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 403629 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1411429 25549350 ~ 25562139 (-)
jcad NA other downstream 1975448 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 192594 27166686 ~ 27168510 (-)
G54873 NA other upstream 495126 27469218 ~ 27473347 (-)
G54947 NA other upstream 754619 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1052647 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1179329 28153421 ~ 28157449 (-)

Expression


Co-expression Network