G54716


Basic Information

Item Value
gene id G54716
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27058737 ~ 27060451 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73763
TAAAACttcatttattaatgaataCATAGACATACAtgtaaaacagacaaaacaccactacaacacacaataaaaagactgtacagtatattacacaTGCAGGGTGTGACTGCCTGCCATCACATGACCACAACATCTACAGAGTAGAAACTGGTGCCCAGCCAGTGGCCGAGGTCTTCAGGAGGGCAGCTCTCACTGCACACAGACCAGAGCTCTGAGATGAATTTGGCACCAAACTGACTGGAAACATGGCAAATCTCACGTTTGCTCTCCAGACGCGTAAAATTCCATTCATAGAGGGGCTGTGTGCATGTTTTTGCGTGAGTCCTCGGGTTAAGGCAGATGTGGGAACTTCAGCACAGGcacacatatatatcttaatttaatGGCATTCTGATAGGTTGTGTTTGATGGCTGCTTCCTGCAAGCTCTCCTGGGATTATGACAGGAGGGTGATGAGTGCGTCAAGAAACTTTCCTCGGTCCTCCATTTTCAGCTCGATAACTAAAGAaagaatgtataaaaaaaaggatgttTTAGGTAATGCATAATTATCAGTGAAAATATTACatccattttattaatttatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73763 True 594 lncRNA 0.41 2 27058737 27060451

Neighbor

gene id symbol gene type direction distance location
ufd1 ufd1l coding downstream 9675 27041506 ~ 27049062 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 23763 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 30243 27024622 ~ 27028494 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding downstream 35469 27019132 ~ 27023268 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding downstream 138319 26884643 ~ 26920418 (-)
cldn5 cldn5 coding upstream 11427 27071878 ~ 27074018 (-)
srrd NA coding upstream 146857 27207308 ~ 27211033 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding upstream 162389 27222840 ~ 27236161 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding upstream 180539 27240990 ~ 27259800 (-)
LOC103030651 cit coding upstream 447252 27507703 ~ 27588964 (-)
G54702 NA non-coding downstream 84645 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 85744 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 248069 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 309458 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 323907 26726651 ~ 26734830 (-)
G54846 NA non-coding upstream 86964 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 182629 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 350783 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 601875 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 652021 27712472 ~ 27714921 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 279023 26761132 ~ 26779714 (-)
ccl28 NA other downstream 482312 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 488798 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1496598 25549350 ~ 25562139 (-)
jcad NA other downstream 2060617 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 106235 27166686 ~ 27168510 (-)
G54873 NA other upstream 408767 27469218 ~ 27473347 (-)
G54947 NA other upstream 668260 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 966288 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1092970 28153421 ~ 28157449 (-)

Expression


Co-expression Network