G54846


Basic Information

Item Value
gene id G54846
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27147415 ~ 27505872 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73949
CACTTTCAGATTTATTCTCGTATAAGTCTGTGACAGTGTCTATTTCAGATGGTTATCAATGTGCAAAAAATAAACCATGGAATTTTCTcttttgaaaagaaaagaaaaaaaaaaaaaaaaacaattcacatTCATGGATTGATGTTAATGGTAAGTCATTCATAGATCAAGCGGCTACCTGCTACCCAGTCCACCTGTGAAACTGACTCGTCACTGTTCATGTGGACTCCTTGAGACGGAGCAATACGTTCAGTCGTACTAGAAggaaaaaaagggcaaaaggGTGAAAAAAGTTCACAGAGAGATAGatggaaaaataaaactcaCTCAGCCTTTTATGCAGTTAAAACTACACTGAGTttctgaaagtgtgtgtgtcagaAAGCGTACAGATGTTGGCAGTCTCTAAATAAAGGATCGTTTGTTTAGCTCGGGGCGATTCAGGGATTTTAAACCATCTTCCCAATGACAGATTGAAAAATGTGTCTCTTGAAATGTGTAAGTCATGAAACTGCAGGTCTTGCAGGTAAATTTCCTGTAAAGAGGTTACAGGAGGTTAGTCTGTGTGTGGTATGGGTGTTTTTTGGGTCATTTAGGGTCACTGTCATCAGTGCATAGGCAGCTCGTACAATAAGGTCAAAACTAAGACCTCCTCTGACTCCTTCTACTCATCAAACACTGATTATCCTGTGGCAAATGAGTTGTCAGGATAGAACATAAAactctaatataataataattataataataataataatattaataataata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73949 True 771 lncRNA 0.36 2 27147415 27505872

Neighbor

gene id symbol gene type direction distance location
cldn5 cldn5 coding downstream 73397 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 98353 27041506 ~ 27049062 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 112441 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 118921 27024622 ~ 27028494 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding downstream 124147 27019132 ~ 27023268 (-)
LOC103030651 cit coding upstream 1831 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 98999 27604871 ~ 27659305 (-)
epgn NA coding upstream 225867 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 228972 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 486590 27992462 ~ 27996332 (-)
G54716 NA non-coding downstream 86964 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 173323 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 174422 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 336747 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 398136 26749076 ~ 26749279 (-)
LOC111192650 NA non-coding upstream 156454 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 206600 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 213781 27719653 ~ 27720578 (-)
G54954 lipg,LOC107667539 non-coding upstream 256756 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 431250 27937122 ~ 27938370 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 367701 26761132 ~ 26779714 (-)
ccl28 NA other downstream 570990 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 577476 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1585276 25549350 ~ 25562139 (-)
jcad NA other downstream 2149295 24950612 ~ 24998120 (-)
G54947 NA other upstream 222839 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 520867 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 647549 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 911861 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 1048855 28554727 ~ 28600510 (-)

Expression


Co-expression Network