G54854 (dhx37)


Basic Information

Item Value
gene id G54854
gene name dhx37
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27166686 ~ 27168510 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73957
TTCATCTCTTTAGCAACTCTGCGAGACATGCTGACAGCTGCTACTCTCCTGGGTTCAGTCACACCAATAATCCTACCAGCActggcaTATCCAGCCTCATAGAGGAACTGTGGAACTTGTGTAGTTTTTCCGCTGCCTGTTTCTCCACACAACACTACAGATTCATTCTCCCTCACTGCCTCCATGATCACCTGCTCCTCAGCCAGAACTGGCAACTTCAGCCGAGCCTCCTGTATCTCAGGCAGTCTGTCCACCGGGATGAACACAGCAGGCTTGCACTCCCCTTTCTTGTGCAAAgcttgttttgattttttttcattactctctttcttctcctccttctgtTCTACTACAGTctgtttctcctcctccttttgcTCCTCCACCTTTTCTGCAAGTGTTTCCTTTTCTGAACCGTCTTCTTCCTCGTCCATCTCATCCTCTGAAGATGAGTCAGAGGCTTCATTCATCTTCTCGGCAGAAGAGTCTTCTTCTTCACTTTCATCCTGATCTTCATctgctcttcttctctttctctttctgttagCGCCACTCAGACTGCTGATTTTGAAAGGAGCTGAACTGTCGTCCTGGCTCTCATCAAGAGac

Function

symbol description
dhx37 Predicted to enable RNA binding activity. Acts upstream of or within positive regulation of mRNA splicing, via spliceosome. Predicted to be active in nucleolus. Human ortholog(s) of this gene implicated in 46,XY sex reversal. Orthologous to human DHX37 (DEAH-box helicase 37).

NR:

description
PREDICTED: probable ATP-dependent RNA helicase DHX37

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73957 True 609 TUCP 0.47 3 27166686 27168510

Neighbor

gene id symbol gene type direction distance location
cldn5 cldn5 coding downstream 92668 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 117624 27041506 ~ 27049062 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 131712 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 138192 27024622 ~ 27028494 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding downstream 143418 27019132 ~ 27023268 (-)
srrd NA coding upstream 38798 27207308 ~ 27211033 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding upstream 54330 27222840 ~ 27236161 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding upstream 72480 27240990 ~ 27259800 (-)
LOC103030651 cit coding upstream 339193 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 436361 27604871 ~ 27659305 (-)
G54716 NA non-coding downstream 106235 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 192594 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 193693 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 356018 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 417407 26749076 ~ 26749279 (-)
G54869 NA non-coding upstream 74570 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 242724 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 493816 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 543962 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 551143 27719653 ~ 27720578 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 386972 26761132 ~ 26779714 (-)
ccl28 NA other downstream 590261 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 596747 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1604547 25549350 ~ 25562139 (-)
jcad NA other downstream 2168566 24950612 ~ 24998120 (-)
G54873 NA other upstream 300708 27469218 ~ 27473347 (-)
G54947 NA other upstream 560201 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 858229 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 984911 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 1249223 28417733 ~ 28423955 (-)

Expression


Co-expression Network