G54873


Basic Information

Item Value
gene id G54873
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27469218 ~ 27473347 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU73985
CAGTATCTCCAGTAGAGCGAGAAGAAGCTCGTGCGCTGTTCAGTCTGTTGTGCTGGATAAACATAATCAGCTGGATTGTGGAAGAATGAATGCTGCCCTGTTCAGAAGATTTCTGAAGAGTTCAGTGTTAAGCTGCTAAAACAGGTTAATCACAAGGCATCCAAAACAATATAAGATACATCCAAAAGCTGCTACATCTGGCAGAAAAATGAAGAAAGGTAAAAGCAAGGCAAAAACTCATCACTGTTCAGATTGTGGGTGGAGTTTTTctcaacagagtgatctcaaaaaacaccagcgctcTCACACCGGAGAAAAACCATTTCTTTGCacagagtgtggaaagagttttactcagaTAAGTAATCTCAAagcacaccagcgcattcacacaggagaaaaaccgcATCAATGCTCAGACTGCGGGAGTAAGTTCTCTCAACGGAGTGATCTCagaaatcaccagcgcattcacacaggagagaaaccgtatcactgttcagactgtgggaggagttttacttGGCAGAGTGAatacaaaaaacaccagcgcgcccacacaggagtgaaaccatattactgctcagactgcgggaagagttttaaagaacggacaatgttaaaaaaacaccagcgcattcacacaggagagaatctgtatcactgctcagactgtggaaagagttttaatcgaAAGGAAAGTCTCCagcaacaccagcgcattcacacaggagagacaCCATATCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU73985 True 748 TUCP 0.44 2 27469218 27473347

Neighbor

gene id symbol gene type direction distance location
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 209418 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 233057 27222840 ~ 27236161 (-)
srrd NA coding downstream 258185 27207308 ~ 27211033 (-)
cldn5 cldn5 coding downstream 395200 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 420156 27041506 ~ 27049062 (-)
LOC103030651 cit coding upstream 34356 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 131524 27604871 ~ 27659305 (-)
epgn NA coding upstream 258392 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 261497 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 519115 27992462 ~ 27996332 (-)
LOC111192649 NA non-coding downstream 56281 27411234 ~ 27412937 (-)
G54869 NA non-coding downstream 224120 27243080 ~ 27245098 (-)
G54716 NA non-coding downstream 408767 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 495126 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 496225 26962935 ~ 26972993 (-)
LOC111192650 NA non-coding upstream 188979 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 239125 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 246306 27719653 ~ 27720578 (-)
G54954 lipg,LOC107667539 non-coding upstream 289281 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 463775 27937122 ~ 27938370 (-)
G54854 dhx37 other downstream 300708 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 689504 26761132 ~ 26779714 (-)
ccl28 NA other downstream 892793 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 899279 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1907079 25549350 ~ 25562139 (-)
G54947 NA other upstream 255364 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 553392 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 680074 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 944386 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 1081380 28554727 ~ 28600510 (-)

Expression


Co-expression Network