G54916


Basic Information

Item Value
gene id G54916
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27712472 ~ 27714921 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74039
CTGTGATGAAGTTCAGCTTTGAGATTTTCATTTGATTGTTGATAGTGTAGGGGAATGGATAACCATGAAGAAGTTCCTTCAGCCGACCAATGACTCCCTCTCCTGAAGTGTTCAGTTTGAGTTGGATGGAATATTTGAAGGGTTTTGGAGCTGTGGTGAAGTTCAGCTTTGAGATTTTCATTTGATTGTTGATAGTGTAGGGGAATGGATAACCACGAAGAAGTTCCTTCAGCCGATCAATGACTCCCTCTCCTGAAGTGTTCAGTTTGATGTTGATAGAATATTTGAAGGGTTTTGGAGCT
>TU74040
CTGTGATGAAGTTCAGCTTTGAGATTTTCATTTGATTGTTGATAGTGTAGGGGAATGGATAACCATGAAGAAGTTCCTTCAGCCGACCAATGACTCCCTCTCCTGAAGTGTTCAGTTTGAGTTGGATGGAATATTTGAAGGGTTTTGGAGCTGTGGTGAAGTTCAGCTTTGAGATTTTCATTTGATTGTTGATAGTGTAGGGGAATGGATAACCATGAAGAATTGCCTTCAGTTGATCAGTGACTCCCTCTCCTGAAGTGTTCAGTTTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74039 True 302 lncRNA 0.41 2 27714045 27714921
TU74040 False 270 lncRNA 0.41 2 27712472 27714921

Neighbor

gene id symbol gene type direction distance location
LOC103030338 LOC108413054 coding downstream 53167 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 123508 27507703 ~ 27588964 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 452672 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 476311 27222840 ~ 27236161 (-)
srrd NA coding downstream 501439 27207308 ~ 27211033 (-)
epgn NA coding upstream 16818 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 19923 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 277541 27992462 ~ 27996332 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 336894 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 370816 28085737 ~ 28150372 (-)
LOC111192650 NA non-coding downstream 48604 27662326 ~ 27663868 (-)
G54846 NA non-coding downstream 206600 27147415 ~ 27505872 (-)
LOC111192649 NA non-coding downstream 299535 27411234 ~ 27412937 (-)
G54869 NA non-coding downstream 467374 27243080 ~ 27245098 (-)
G54716 NA non-coding downstream 652021 27058737 ~ 27060451 (-)
G54920 NA non-coding upstream 4732 27719653 ~ 27720578 (-)
G54954 lipg,LOC107667539 non-coding upstream 47707 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 222201 27937122 ~ 27938370 (-)
LOC111192655 NA non-coding upstream 284709 27999630 ~ 28008669 (-)
G55029 NA non-coding upstream 448892 28163813 ~ 28165094 (-)
G54873 NA other downstream 239125 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 543962 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 932758 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1136047 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 1142533 26558406 ~ 26569939 (-)
G54947 NA other upstream 13790 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 311818 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 438500 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 702812 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 839806 28554727 ~ 28600510 (-)

Expression


Co-expression Network