G54920


Basic Information

Item Value
gene id G54920
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27719653 ~ 27720578 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74047
TTTGTGTAGTTATTGGTATAGTTGTTGGTGAAGTTTGTGGTTCTGTTGTTGGTGTAGTTGATTCAGGTGTTGGCACTGCAGTTGTATTTGCTGGTTCTGTAGTTTGTGTAGTTATTAGTATAGTTGTTGGTAAAGTTGGTGGTTCTGTTGGTCTAGTTGATTCAGGTGTTGGCACTGTAGTTGTATTTGCTGATTCTGTTATTTGTGTAGTTATTAGTATAGTTGTTGGTGAAGTTTGTGGTTCTGTTGTTGGTGTAGTTGATTCAGTTGTTGGAACTATAGTTGTATTTGCTGGTTCTGTAGTTTGTGTAGTTATTGGTATAGTTGTTGGTTCTGTTGGTGTAGTGGATGCAGTTGTTTGCACTGCAGTTGTATTTGCTGGTTCTGTAGTTTGTGTAGTTATTGGTATAGTTGTTGGTTCTGTTGGTGTAGTGGCTGCAGTTGTTTGCACTGCAGTTGTATTTGCTGGTTCTGTAGTTTGTGTAGTTATTGGTATAGTTGTCGGTGTAGTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74047 True 513 lncRNA 0.38 2 27719653 27720578

Neighbor

gene id symbol gene type direction distance location
LOC103030338 LOC108413054 coding downstream 60348 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 130689 27507703 ~ 27588964 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 459853 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 483492 27222840 ~ 27236161 (-)
srrd NA coding downstream 508620 27207308 ~ 27211033 (-)
epgn NA coding upstream 11161 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 14266 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 271884 27992462 ~ 27996332 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 331237 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 365159 28085737 ~ 28150372 (-)
G54916 NA non-coding downstream 4732 27712472 ~ 27714921 (-)
LOC111192650 NA non-coding downstream 55785 27662326 ~ 27663868 (-)
G54846 NA non-coding downstream 213781 27147415 ~ 27505872 (-)
LOC111192649 NA non-coding downstream 306716 27411234 ~ 27412937 (-)
G54869 NA non-coding downstream 474555 27243080 ~ 27245098 (-)
G54954 lipg,LOC107667539 non-coding upstream 42050 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 216544 27937122 ~ 27938370 (-)
LOC111192655 NA non-coding upstream 279052 27999630 ~ 28008669 (-)
G55029 NA non-coding upstream 443235 28163813 ~ 28165094 (-)
G55030 NA non-coding upstream 448075 28168653 ~ 28169114 (-)
G54873 NA other downstream 246306 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 551143 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 939939 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1143228 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 1149714 26558406 ~ 26569939 (-)
G54947 NA other upstream 8133 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 306161 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 432843 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 697155 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 834149 28554727 ~ 28600510 (-)

Expression


Co-expression Network