G54947


Basic Information

Item Value
gene id G54947
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27728711 ~ 27731079 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74086
CTTCTTATCAAACAGAAAACCAAACACTGTAATGAAGAAGCCctgagacaaaaataaaaaagacagataCAGTTAAACAGAGGTCTCAGTGCAGAAATATCAAGattatttttcagtttattaGATTTGCATACAGGGTTTAGAGggttactttaaaaaacaacTGTGGTTCatttatgccaggttcacatgACACGGTTTAAGCAGACAGTTTTTAGGTTTGCTGCAGTTTTTTGCTAAttggacacaaaaaaaaacccaaaaaacaaaataaattagggATCTCTTGGTGCTCGTGCATCTTGTGGTGTGTAATACTGAAAGACGCTCACCGAGCTGCGGCTGAGCGATCGCCAACCAGTCACAGGTGCCCAGTAAATATCTGGCATGCtaaatatctgactcagtcagtGACCTGGGATTCAAGAGCAGTAAAGGTACTCGCACACTGCAGGCAGTAGCTGAGCCGCTGTACGCTGACCCCCATTGGATTGAATTGCTTCTCCTGCAGCAAAAAAAGTTTGCCACTGCCATGGAGCAGCGGTGCAAAGTGGTGCATTTCCACGTACATAACCACGCCTACACAGTGCTGCCGCTCATCCCAGTCAAAGTTCAACCTGGTTCGACTTTGACGGCAAGCTGTACTGCCACAAAAAACGCAGAGTGAACACACTCAGCTGTAGATCACTTCCCtacactcatatagagataCTAGGAGGAAGACCAGAATCAGCGCTTCattctgattttaaaatgtttaattataaagcaaatatataatatttgtggtcataaaaaatacagcaatgTATTACTAAGGTTTTCTGTGTAAAGCTCTTTATAGCTCTTTATAAATCCCTATTATCTACCACTACTAGTAGATTTTCCATTGAACGGGAAAATAAGATTAtcccctgtctgggaaactgcccaaTAGTGCATAATGTTATTTGTAAGGTATGTAAGATTATTTACCTGTAGAGAGTTTAGGATGGCAAACAAGTAATGCAGCTCTACAGTTCCAGGACTGGTTATGGTGCCCAGGCCAAACCCCCAGGTGAGGCCTAAAATGGGGGTTAAGACAGCCACAAATCGAGCGATGACAGCCATACTGTTCTTCTCATCTGAGGTTCTTTCTCCCActctttttttcaacattttatacAGGACCACTATCATGACCACAAAGTTGGTGAAGACTATGGCCAGGACTGGAAAAGCGAAGGCCAGCAGAGCTCTAGAATCATCCCACTGCAACCAGCATGCATCCTTCCTGATATACTTTCCCCTTCCTGCTGTTGATGCCACAGTAATGACGGCAATGATGAGCGGAGCTCCATAGCCCACGCTAAAGGAAATTGCCATCAAGGAAGTCTTGGACATGTTTGTGAAGACCACAATGACGCTGTACAGCAACAGGATAGCAGACACCAGCATCCAGAAGAAAACGGCCAGGTAAAAGAAGTGGATGAAGAAGATCACTGCATGGCAGGCAGGGTTTGTCTCCAGCTTATCGGTCACTCCAGCAATGAGCCAGATATCTGCGATCAGAAGGGACAAGGCGATGTTGACCATTGAGACGTGTCGCAGGTATAGCATTGGACTATTGGTCTGGGAGCTGGTGAGGGGCTTCCAGAAGATGATCTCTATGAGGAGGAACACCACCAAGCTCAGCACTGACACACTAAGACCGACGTAGGTGATTATGGTCAGGGAAAGACTGTCCTCGTTTAAAGGAGACATCAAGATGGAAAATGACGTGGTGTGATTGCATTCACACATCAcgtttcctggaaaatcttccGTCAGCTTACACCCATATGAGTCCCAACCACCTATATTATTATAAAGACTAAagttccagaaaacacactctgGATTTGCCagtgtttttgagtttttttgagTAAGGAGTTTTTTGAACTTGAAAGTGACGTCGCTTTCGTTCTGACTGGGGGAGACCATAACAATGATTCCACTAATGGTGTTCACTGTGGTGTCATTTACACTTGTATTTCTTGATGGCAGAATGTTACTCAGTGAGAAAAACGCTAAGGCAGTGATTGTAAGGTTTTTAGTGAGATTGGTGCTGGGGATGAATAGCGAAGCCTCTGAATGGTTCCCAAATGTTTCATTGAAAGGCTGATCGATGATGGTAGCCTTGGTGAATGTGATGGTGTTGGTGCTGGTTGCAAATTAGAGATATTATCTGAAGtaatttttaacaatattttccAAAGAAAGCAGTAGTAAAGAACTGTTTCCTTGGCTGACAGGTTGAGAATTTAAGGCTTcccatgttttatttgtttcagcAGATGAAATGACCTCCACTGTTTCTAGAAAAttctgaaaggaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74086 True 2369 TUCP 0.43 1 27728711 27731079

Neighbor

gene id symbol gene type direction distance location
LOC103030338 LOC108413054 coding downstream 69406 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 139747 27507703 ~ 27588964 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding downstream 468911 27240990 ~ 27259800 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding downstream 492550 27222840 ~ 27236161 (-)
srrd NA coding downstream 517678 27207308 ~ 27211033 (-)
epgn NA coding upstream 660 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 3765 27734844 ~ 27753958 (-)
LOC103029383 LOC106585208,LOC102795852 coding upstream 261383 27992462 ~ 27996332 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 320736 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 354658 28085737 ~ 28150372 (-)
G54920 NA non-coding downstream 8133 27719653 ~ 27720578 (-)
G54916 NA non-coding downstream 13790 27712472 ~ 27714921 (-)
LOC111192650 NA non-coding downstream 64843 27662326 ~ 27663868 (-)
G54846 NA non-coding downstream 222839 27147415 ~ 27505872 (-)
LOC111192649 NA non-coding downstream 315774 27411234 ~ 27412937 (-)
G54954 lipg,LOC107667539 non-coding upstream 31549 27762628 ~ 27767606 (-)
G54965 NA non-coding upstream 206043 27937122 ~ 27938370 (-)
LOC111192655 NA non-coding upstream 268551 27999630 ~ 28008669 (-)
G55029 NA non-coding upstream 432734 28163813 ~ 28165094 (-)
G55030 NA non-coding upstream 437574 28168653 ~ 28169114 (-)
G54873 NA other downstream 255364 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 560201 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 948997 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1152286 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 1158772 26558406 ~ 26569939 (-)
LOC103039900 NA other upstream 295660 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 422342 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 686654 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 823648 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 2012949 29744028 ~ 29840753 (-)

Expression


Co-expression Network