LOC103039900


Basic Information

Item Value
gene id LOC103039900
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28026739 ~ 28043251 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74182
agAAACtgatggtctcttaattttttttagagctgtgaaTGAACCTGACTATTCTCTCTGTCCAGCAGTTACAGCTCCCCCTGTGACCGAATGCCAACCATGGCAGAAACGGGCCCAGGACAAGTGTGTCTGTAGAGTTCCCTACGAATGCGAGCCGTCTCTGGAGGTGTGTGCCACCAGTGTAGAGCGCAGCTGGACCAGGGGGCAGAGTGTGTGAAAGATATTGGCCGCGCAGTGTCTGGGGCAACAGTTCACTTTAGCTGACCACAGCGCCTGCCAGTGGCCAGAGCTGTCCACTGCTGTCTGCCCAGGGTGCTCTCTCTGGACTGTGTGTGATGATCAGTCGCAGACGTGTCGCTGTCGGACactgcaggagtgtgtgtctCCCGGCCGCTGGATCCAGGTCTGTGTGCAACTCAGTGGAGAGTCCACACCTTCCACAGTGTCGGAGTGCGAAGTGGGGGTCCGAAAGTGCAGAGGGGAGACCCCCATCATCCTCAGCCTGCAGCCCTGTGAATCCTAATCTTGCTTACACTCACAATAACTCCTTTTAGATTAGTGGAAAGTTCTGAGAGAAATCTACGTCCtctagttttacagttttactacCCCACTCTTACCTAAATGCATTTAAGCTTCAAGCACATATATCAGCACACACTCTCCTCAATTGTTGTCATTTGGAAGTGTTTAGTAAACTCTTAACAGACTTGTTTCCAGTGCCAGTCTAACACCACCAAGCTTTTTTCTCAACTATTAGTATGAAAGAAAACACCACAAAGCTAATAGCCCACTGGTTAGCGCCAAGCTAGCACAATAACTTTCATACCCCAACAGTTAGCACTGAACTAACACCACAATGCCTTAAGCCCACCAGCAAGCACCACAAATCTTATAGCACCTCAATTAGCACCAAGCTAACACCACAAGATGATGGCGTTCCAATTAAACACTCAGATAAATTTACAGTATactctttaaaaagatttaGAGATTAGCACAATTGGCTTAACagttatttgtctgttttatgGCAAATCCATACTTTGCATATTTCCCACTTTTTTATGTCCCAGATTATCACTATTAGCACCATTCGCAAAACCAGTTAATAACAACTAAtggattatacagtatattgcacATCCAAACAGAAGTTAAACAGTACAGCTTTTAGTACTATTGATATGCTATGTTGAAGCCAGCTTGTATTCTGAATTTAGGGTTGCCGAGGCACTCATGACTTCTAGTAGAAAATCTGACCCATAGGGAAGTTCTAGTTAAAGTTTTTATGGAACTCAGCATTTTAACCGACTGATTAGCACCAAGCTATAGCACCACCCAGCTCATAAACAGTAATCACTAATAAACATGCTCTTGTTGTTTCTGATGCTGAACTTTACTGCTATCTTAAAAGGCTCAGATATCTATAATCACATTTTATATGTACCAAACAGAAACCCTGTTTTTACTCTATTgtgtataaatgaataaatgtctCCATATATGGTC
>XM_007247170.3
CTCACGCAActtagatacacacacacacacacagagacaaaaacAGTCGGACACAAATCTACAGCACAGACTTCTGCTCCAGCATGACCATGTCTGGGAGCTGCAGACTGGGATCTGTGCTGTTGTTGTCCTGCCTGACTGTCGTTCTCCTGCTGCCTGCAGTCAGAGCCGAGCCGGTGCACTGCGTCTGGACACCATGGTCACCCTGGTCAGCCTGCGACGCCTGCTCCAAAACACAGACGCAGATTCGCTCTTTCTCGGTTTACCCGCAGTTCGGTGGGCTGGGCTGTACAGGTAACTCCCACCGAACACAGAGCTGTGAGACCACACAAGGCTGCCCCCTGGAGGAGGGCTGTGGGAACCGCTTCCAATGCCAGTCCGgaaagTGTATAAATCAGGCTCTGGTGTGTAATGGTGACATGGACTGTGAGACCGATGGGTCGGATGAGCAGCGCTGCAAGACCAGAGGAGAAATATGTACCCTACAGAAACCCCCGCCACAGATAGAACTCACTGGATTAGgGTATGATGCACTGAAGGGTCAGTTCAGGGGGTCTGTGATAAACACCTTGAGTTTTGGTGGTCAGTGTCGGAGAACATTCAGTGGAAATCATCAGGACTTCTACCGACTTCCACAAAGCGTCCTAAGATACACCTTCCAGgTAACAGCTGAAAACGATTTTTCCAGCGAGTTCTATTCCAGTTCCTGGCATTACGTGCAGGACATTAATAACCGTGAAACAACAACGGGAACAACTTCAGGACACCATTACTTTACCTCTAAGGAagaactgaaaaaaacggaGTCCCGGCAGCTGGTGGTGGTTAGCAGTAATATTGAAGTGGCTCAGTTTCAAAACCAGCCGCCTGAACACCTCCCCCTGTCCGAGGAGTTCTGGAGGGCTCTGTCCGGCCTTCCAGTGGTGTATGATTACCCAGCGTACCGCAAGCTTCTGGAGAGATTCGGGACACATTTCATGTCAGAGGGCACAATGGGGGGGCAGTTTAGAGCCATGATGTACTTCAGCCAGGAATTCATCCACAAGCTCAAGACTTCGAAGGAGGACTTTCATGAGTGTGTAAAAAGGACCCACACTGTGTTGTTCTTCATTAAAATCACCACCACAAAGTGCAAGAGCTTTAACAGAGACTTAATCCACTACAACACGCAAGATCAACATagtaaaacaaacagacaggtaACGGCGAACGGAGGAGACACGGGCTACATCGCAAAACTGACATCTCTGAATCTCAACAATCCAGAGGCAAACGAGAAGGTTTTCTCTCAGTGGGCGGGCTCAGTAAAGGACCTGCCCAAAGTCATCAGTCAGAAGATTCGACCGCTGTATGAGCTTGTGAAGGAGGTACCGTGTGCAGGAGTGAAGAAGCTCTACCTGAGAAAGGCCCTGGAGTCCTACCTGAGTGAGGAGAACACATGTCGCTGCCGCCCCTGCAAAAACAATGGCCTGATCGTGctgagagagggagtgtgtgtttgtgtgtgtaagcagGGCACAAGCGGTCCCGCCTGTGAGCACGGAGCTCCAGTGGAGGAACAgccaggaGTGATCCACGGAGGTTGGAGCTGTTGGTCAGAATGGAGTGTATGTTCTGCAGGCCGTCGGAGCCGCAGTCGGTCCTGTAACCACCCAGTGCCTCAAAATGGAAAATCTTGCATTGGAAAGTCTGAGGAAACAGTGAActgtgaggaagaggaggagctgCAGTATCTTCGCATGATGGAGCCTCACTGCTTTGATCAAACACTAGAACCCATTAGGCGCTGTGGATCCCCCCCACCTCTGATCAATGGCTTTATATTGGACCCTAAAGAACTATACGCAGTGGGCAGTAAGGTGGAGTACTCATGTATTGATGGGTATCACCTTGTCGGGGAGCCGGTCGCTGAGTGTACGGAGCAGCTCACCTGGAAGAGAGCACAGCAGCTGTGTAAGAGTACAGAGTGTGTTCCGCCTGTCCTGTCTGCGGATGTTTCTGGCACTCCATGGAAGCTGAGTTACAGGATCGGAGAGACAGTGGAGCTGAACTGTACTGCAGGGAGAGCGAGAGATGGACCGGCTGAAATCCGCTGCAACTCTGGCCTGGCTTGGTCACCTCAATCTGAAAACACAAAATGCCTTGCAGCAGTTACAGCTCCCCCTGTGACCGAATGCCAACCATGGCAGAAACGGGCCCAGGACAAGTGTGTCTGTAGAGTTCCCTACGAATGCGAGCCGTCTCTGGAGGTGTGTGCCACCAGTGTAGAGCGCAGCTGGACCAGGGGGCAGAGTGTGTGAAAGATATTGGCCGCGCAGTGTCTGGGGCAACAGTTCACTTTAGCTGACCACAGCGCCTGCCAGTGGCCAGAGCTGTCCACTGCTGTCTGCCCAGGGTGCTCTCTCTGGACTGTGTGTGATGATCAGTCGCAGACGTGTCGCTGTCGGACactgcaggagtgtgtgtctCCCGGCCGCTGGATCCAGGTCTGTGTGCAACTCAGTGGAGAGTCCACACCTTCCACAGTGTCGGAGTGCGAAGTGGGGGTCCGAAAGTGCAGAGGGGAGACCCCCATCATCCTCAGCCTGCAGCCCTGTGAATCCTAATCTTGCTTACACTCACAATAACTCCTTTTAGATTAGTGGAAAGTTCTGAGAGAAATCTACGTCCtctagttttacagttttactacCCCACTCTTACCTAAATGCATTTAAGCTTCAAGCACATATATCAGCACACACTCTCCTCAATTGTTGTCATTTGGAAGTGTTTAGTAAACTCTTAACAGACTTGTTTCCAGTGCCAGTCTAACACCACCAAGCTTTTTTCTCAACTATTAGTATGAAAGAAAACACCACAAAGCTAATAGCCCACTGGTTAGCGCCAAGCTAGCACAATAACTTTCATACCCCAACAGTTAGCACTGAACTAACACCACAATGCCTTAAGCCCACCAGCAAGCACCACAAATCTTATAGCACCTCAATTAGCACCAAGCTAACACCACAAGATGATGGCGTTCCAATTAAACACTCAGATAAATTTACAGTATactctttaaaaagatttaGAGATTAGCACAATTGGCTTAACagttatttgtctgttttatgGCAAATCCATACTTTGCATATTTCCCACTTTTTTATGTCCCAGATTATCACTATTAGCACCATTCGCAAAACCAGTTAATAACAACTAAtggattatacagtatattgcacATCCAAACAGAAGTTAAACAGTACAGCTTTTAGTACTATTGATATGCTATGTTGAAGCCAGCTTGTATTCTGAATTTAGGGTTGCCGAGGCACTCATGACTTCTAGTAGAAAATCTGACCCATAGGGAAGTTCTAGTTAAAGTTTTTATGGAACTCAGCATTTTAACCGACTGATTAGCACCAAGCTATAGCACCACCCAGCTCATAAACAGTAATCACTAATAAACATGCTCTTGTTGTTTCTGATGCTGAACTTTACTGCTATCTTAAAAGGCTCAGATATCTATAATCACATTTTATATGTACCAAACAGAAACCCTGTTTTTACTCTATTgtgtataaatgaataaatgtctCCATATATGGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74182 False 1512 lncRNA 0.43 3 28026739 28028474
XM_007247170.3 True 3595 mRNA 0.49 18 28026739 28043251

Neighbor

gene id symbol gene type direction distance location
LOC103029383 LOC106585208,LOC102795852 coding downstream 30407 27992462 ~ 27996332 (-)
epgn NA coding downstream 270905 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding downstream 272781 27734844 ~ 27753958 (-)
LOC103030338 LOC108413054 coding downstream 367434 27604871 ~ 27659305 (-)
LOC103030651 cit coding downstream 437775 27507703 ~ 27588964 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding upstream 8564 28051815 ~ 28083920 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding upstream 42486 28085737 ~ 28150372 (-)
selenop LOC108412737 coding upstream 217246 28260497 ~ 28262000 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 402334 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 438161 28481412 ~ 28492730 (-)
LOC111192655 NA non-coding downstream 18070 27999630 ~ 28008669 (-)
G54965 NA non-coding downstream 88369 27937122 ~ 27938370 (-)
G54954 lipg,LOC107667539 non-coding downstream 259133 27762628 ~ 27767606 (-)
G54920 NA non-coding downstream 306161 27719653 ~ 27720578 (-)
G54916 NA non-coding downstream 311818 27712472 ~ 27714921 (-)
G55029 NA non-coding upstream 120562 28163813 ~ 28165094 (-)
G55030 NA non-coding upstream 125402 28168653 ~ 28169114 (-)
G55079 NA non-coding upstream 211069 28254320 ~ 28254981 (-)
G55081 NA non-coding upstream 218824 28262075 ~ 28262656 (-)
G55085 LOC108412740 non-coding upstream 268154 28311405 ~ 28313529 (-)
G54947 NA other downstream 295660 27728711 ~ 27731079 (-)
G54873 NA other downstream 553392 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 858229 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 1247025 26761132 ~ 26779714 (-)
ccl28 NA other downstream 1450314 26573400 ~ 26576425 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 110170 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 374482 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 511476 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1700777 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1853264 29896515 ~ 29934430 (-)

Expression


Co-expression Network