G55029


Basic Information

Item Value
gene id G55029
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28163813 ~ 28165094 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74202
gtgtataatagCCATGATCATCGCAACACGTCTtgagcagggtgtaagatagggcctaaaccaggggtcggcaaaTAATTTTGGCCActggccagatattttccaagccattaagtggcaggccaaaaaaaagtgtaatgggatggagtgctacagactagtagctctccagcccagagggttgttgaacccaattgcagaacagctgatctgaaagcacttaaaaaacaaacaaaaaataaacacaccgttCCTTACTCAGGATCGaaccgtgtcgtcagggtcgcggtctaATATACTACTGCTACTCAGGCTAGTAAAATTGGGAAACGGCTGGGAAAAAAAcgccttataaggagatagggagcccaagaaccggcagaaaaacaagaacgggcgagaggggagggatgtaaacaaaagttcgccagagaagcattttattttattttttcattatcgttcattatagtttaaacaacctcacagCCCAGATGTTTCATacttgcgggccagatgtattgATGAATAGACAAACAGAAGTTCTTTACAATAAGTGTATACTCATCTCTAGCTCACGTTGCAGTACATAATAGCTATGTCAACTCTTTCCTTTTCAGACATGGTTTAAACTATTGGCCTTTTTTTTCTTACGTTTTTTTTGGAGTTAAATTCGCTCACAACTAGCGTAGCAATGGTTTTGCTGTATCCACTGATTGATTACACCCATTCACAAGAAACTCCAGCGAGGTTTCGAGAATCAGAATCATTGGAAAGGAGTGTATAATCTTAAAGGTagtgctgttttattcagattttattttagggcAGACTGTGTAGTGTGAGGGAGATGATAACTAACAAAGATTAAAGACAGAAAagtctgtaaaaaattaaaaactttatgtATGGAGTCTCTCACGGTTTCAtcattatttaagattttttaaatcttagtGTGGGCCAGACACAACCAGGCAAAGAATCCTTTAAGcatctaaatgttttttgtttttgagtaCCATGGTTctatataaaacaattaaaaacagtgCAATATTCATTCAATAAGTACAAAACATTGCTTGAGGTAAGGCAACTGAACTGTAATAGTGTTATAATTCTAATTAtaacaacagtaataataataataataataccaccACAGGAATGCTATATTCCTTAAGTTTATATGTGTAAATTTGATTTTACTTCAGCCCACTGGAGTCACAGCCTCAGCCCAGAATGCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74202 True 1252 lncRNA 0.38 2 28163813 28165094

Neighbor

gene id symbol gene type direction distance location
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding downstream 13441 28085737 ~ 28150372 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 79893 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 167481 27992462 ~ 27996332 (-)
epgn NA coding downstream 407979 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding downstream 409855 27734844 ~ 27753958 (-)
selenop LOC108412737 coding upstream 95403 28260497 ~ 28262000 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 280491 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 316318 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 342044 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 360012 28525106 ~ 28532269 (-)
LOC111192655 NA non-coding downstream 155144 27999630 ~ 28008669 (-)
G54965 NA non-coding downstream 225443 27937122 ~ 27938370 (-)
G54954 lipg,LOC107667539 non-coding downstream 396207 27762628 ~ 27767606 (-)
G54920 NA non-coding downstream 443235 27719653 ~ 27720578 (-)
G54916 NA non-coding downstream 448892 27712472 ~ 27714921 (-)
G55030 NA non-coding upstream 3559 28168653 ~ 28169114 (-)
G55079 NA non-coding upstream 89226 28254320 ~ 28254981 (-)
G55081 NA non-coding upstream 96981 28262075 ~ 28262656 (-)
G55085 LOC108412740 non-coding upstream 146311 28311405 ~ 28313529 (-)
G55099 NA non-coding upstream 150859 28315953 ~ 28316226 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 6364 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 120562 28026739 ~ 28043251 (-)
G54947 NA other downstream 432734 27728711 ~ 27731079 (-)
G54873 NA other downstream 690466 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 995303 27166686 ~ 27168510 (-)
LOC111192657 NA other upstream 252639 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 389633 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1578934 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1731421 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 3470387 31635481 ~ 31690808 (-)

Expression


Co-expression Network