G55030


Basic Information

Item Value
gene id G55030
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28168653 ~ 28169114 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74203
tctaagaaatataagtacagatttgtacttaaaagagtacaaagcttgtcgctggggctgtaccttatattgaggcacaaaaaagtacctttcagtgaaagtccttttttgtacccatggtttttgtggcagtaaagatcataaagattataaacattatcatcaactaaatatggctcaaaaacttgatgatacaaaattgtctggctttcaaataaaaaatgtgcaatttaaatatatattgttcattagtacagtgatacagaatactgaatgtaccctttggctggttaaatggtacaaatttgtacttattgctgttagaaatgactttgtacttcagagggaacaaatctgaccccgtaaagaccaatattgtacctttgagggtacaattataaagagtgtaccttcgagtacaaaaaagtactcatatcgtacctctgttttttagagtgtagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74203 True 462 lncRNA 0.33 1 28168653 28169114

Neighbor

gene id symbol gene type direction distance location
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding downstream 18281 28085737 ~ 28150372 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 84733 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 172321 27992462 ~ 27996332 (-)
epgn NA coding downstream 412819 27731739 ~ 27755834 (-)
selenop LOC108412737 coding upstream 91383 28260497 ~ 28262000 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 276471 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 312298 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 338024 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 355992 28525106 ~ 28532269 (-)
G55029 NA non-coding downstream 3559 28163813 ~ 28165094 (-)
LOC111192655 NA non-coding downstream 159984 27999630 ~ 28008669 (-)
G54965 NA non-coding downstream 230283 27937122 ~ 27938370 (-)
G54954 lipg,LOC107667539 non-coding downstream 401047 27762628 ~ 27767606 (-)
G54920 NA non-coding downstream 448075 27719653 ~ 27720578 (-)
G55079 NA non-coding upstream 85206 28254320 ~ 28254981 (-)
G55081 NA non-coding upstream 92961 28262075 ~ 28262656 (-)
G55085 LOC108412740 non-coding upstream 142291 28311405 ~ 28313529 (-)
G55099 NA non-coding upstream 146839 28315953 ~ 28316226 (-)
G55171 LOC106579932 non-coding upstream 300398 28469512 ~ 28470613 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 11204 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 125402 28026739 ~ 28043251 (-)
G54947 NA other downstream 437574 27728711 ~ 27731079 (-)
G54873 NA other downstream 695306 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 1000143 27166686 ~ 27168510 (-)
LOC111192657 NA other upstream 248619 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 385613 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1574914 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1727401 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 3466367 31635481 ~ 31690808 (-)

Expression


Co-expression Network