G55085 (LOC108412740)


Basic Information

Item Value
gene id G55085
gene name LOC108412740
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28311405 ~ 28313529 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74269
AGGAACCATAAAGATCAATTTATCAACATTCTACATTTGCAGATAAACCagtgcatatttttttgtcctACAGATCCGATATAAAGTACAGCAAACACtgataaacataataaaacaacaaatatattaaaataaaacatttacaataacAGAACGCCTCACTGCCAGTGCAGGTCATTCATTTACGGTAAACAGCCAAGTGATAAAGAAGGCGCACGCTCGGATCCTTCTAGAAATGTACGAAGCAAGTCGAAAGCCGTATTTTACAGCAGCAAAGTTTTAAAGAGGAAATTCCAGGTGAAAATGAAGAGGAATGCCTGTCTCAGATAATTCGTTCTTCCCTTTGGTTCACTAAATTCCGGGGATTCAATAATCCTGAAAGATCCTCTAAAATCTGATTCCTACAGTGAGAAAGCAGTTAGCTTTATTTACAATTTCCCTCCCCAGACTTCCAGGTGTGTTCCTGCATAGTTACTCTTACTATATTGGACAAGCTTGACAAAGAGGTAGTATACATCCTACTCTGAATCTACTCTATTAGATTTGATGTTGCACTATAAATCACAATGATATCACATGATAAATCACCATAATAATGACTGAttcttaaattacattattcattcattcattacacTTTGACTTTTTGTTCCATGTATGCACCAATCAGCTGTTCTAATACTTAGCTGTTGATGCATAGCAGCACGCAGAAACAGCTCATGCTCGAATAACAATCATAACTCACTGCTGCCACATATCAGAGATCTAAAAAGCTTGTTCAATGAATCAATAGTATCTATGGAAGAACACACTAACGGACAGACTGGAGAAAGCTCCCTTGCTACAAGGGGGGgtaaaatagcaaaatatgAAGCTACTATGCAGCCAAATGCCCCGCAATGGCTCAGTTtactacatatatacacattatcaCATCCGCTGAGTCATGCTAATATTGGACGCAATCAGAAAATGGCCATCAGTTAATCTCTTTCCAGCTTCCAGTGGAAAACCCAGTCTTGGGAAcaagtctctgtgtgtgtgtgtgaggttcaATGTCCTTAAAAGGTTGGATACGGAAAACAAAGTGCTTTAAAGACTTCAGAGAGCAGTAGTTCAGTGTAAGAAAGggcaaaatgagagaaagagaaaatgagagagaaaagaagccCCTTTATCTTACAGTAGATCAACAGTCAGTTTCATAAAACCATATTAAGCCCAAGTCTGGACTaaataagtttaagtttaatggTGAAATATCAACCATCAGCATCTCATATTTAGTCCCGAGACCAggatttaaaggtttaattcaccagcaaataaaaaaaaattattgtcccttttttgCATGTGTGTTTTCTACATCTCATCAGAGCGATGCTGCTGTATAATAACAGACGTGGGTTTCTGTCCAATCCAGTTCTCCTTCGCTTTACTCTGCCCATCATAAACCACTGGCGGTGCTGATGAGTCCCTGTGTGCCTCTGAGAGTGCCCCCGCTGGCTGGAGGTCAGACTGAGGTGCGGCAGGAAAGTCGGAGGAAGAGTTGCTGTTGACACCGGATTCAGATTCCGACTGTTCCACCTTGTGGTAATCAGGAGTGTGGTTTTGGCCACCAGTGAGCAGCATCGGGCTGTTTTCCACTGTGGCTACGAGGAGAGGCTCCTCTTCTACTGCTTCTTTCGGGGTGCTGACAGGTTCTTCATTAGAAGACATTAGAGGGTAGGAGCGGAGGGCCCGGGACATTC

Function

NR:

description
PREDICTED: cyclic AMP-responsive element-binding protein 3-like protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74269 True 1754 lncRNA 0.41 2 28311405 28313529

Neighbor

gene id symbol gene type direction distance location
selenop LOC108412737 coding downstream 49405 28260497 ~ 28262000 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding downstream 161033 28085737 ~ 28150372 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 227485 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 315073 27992462 ~ 27996332 (-)
LOC103042060 LOC103042060,LOC107565988 coding downstream 557447 27734844 ~ 27753958 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 132056 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 167883 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 193609 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 211577 28525106 ~ 28532269 (-)
LOC103032242 NA coding upstream 224493 28538022 ~ 28547207 (-)
G55081 NA non-coding downstream 48749 28262075 ~ 28262656 (-)
G55079 NA non-coding downstream 56424 28254320 ~ 28254981 (-)
G55030 NA non-coding downstream 142291 28168653 ~ 28169114 (-)
G55029 NA non-coding downstream 146311 28163813 ~ 28165094 (-)
LOC111192655 NA non-coding downstream 302736 27999630 ~ 28008669 (-)
G55099 NA non-coding upstream 2424 28315953 ~ 28316226 (-)
G55171 LOC106579932 non-coding upstream 155983 28469512 ~ 28470613 (-)
G55179 anapc5,LOC107687977,LOC107566004,LOC107703168 non-coding upstream 185128 28498657 ~ 28499078 (-)
G55180 anapc5,LOC107566004,LOC107703168 non-coding upstream 185859 28499388 ~ 28500379 (-)
G55156 gpx8 non-coding upstream 189854 28503383 ~ 28505993 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 153956 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 268154 28026739 ~ 28043251 (-)
G54947 NA other downstream 580326 27728711 ~ 27731079 (-)
G54873 NA other downstream 838058 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 1142895 27166686 ~ 27168510 (-)
LOC111192657 NA other upstream 104204 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 241198 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1430499 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1582986 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 3321952 31635481 ~ 31690808 (-)

Expression


Co-expression Network