LOC111192657


Basic Information

Item Value
gene id LOC111192657
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28417733 ~ 28423955 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74384
TCTCTCCTGTCACAGCGAGGCCAAAGGTCATAGTGAGGTCACTGAGATCTGCCAGTGGTGACCAGCCGGCGATGCTGATGTGCAGCGCCTACGACTTTTACCCCAAACCCATCGAACTGACCTGGCTGAGGAACGGCAAGAAAGTGACCGGCGACGTGGTTTTCTCTGAGGAACTGTACGACGGAGACTGGTACTATCAGATCCACTCTCAGCTGGAGTACAGTCCAGGACCTGCAGAGCAGATCACCTGTATGGTGGAACACCTCAGCTTCAGCCAGCCGGCTCTGTTCCACTGGCAGAAAGGCTGGACATCAGTGCAGGTTTTGGAACTCAGAAGCTGAATGAAGAAACCCCCAGATCATGTGAtgttaaacaaagaaaaacaaacactgatGGACTGATGATTTCCATCACTTTTGGGAACTGAGgaataaaacagtaacttttGTTGTTTAGACCAGACATTAGCATTAAGCTTAGATAACTGCGCTCATGTATTAATCTCACAACATGTTAGTAACACTGCTGGagtcatattaaaaataaaattattatacaatatgcAGCAAAATCTGTACATCTGAGaaattcagagaaaaaacagtttggatGATACATCATGAGATCATGAATGTAAATGAATTCATTACTGCCTCTTAGCTTATCATTTGGGGATCTTTTTTGCAATGTTTCTTAGTGTTTATATGTGTTCTGTATATCAAATAATTATGTCAATGacactaaatatatattaaaatacatactaATGTGAATTTGAATGGC
>XM_022670450.1
GAGGCCAAAGGTCATAGTGAGGTCACTGAGATCTGCCAGTGGTGACCAGCCGGCGATGCTGATGTGCAGCGCCTACGACTTTTACCCCAAACCCATCGAACTGACCTGGCTGAGGAACGGCAAGAAAGTGACCGGCGACGTGGTTTTCTCTGAGGAACTGTACGACGGAGACTGGTACTATCAGATCCACTCTCAGCTGGAGTACAGTCCAGGACCTGCAGAGCAGATCACCTGTATGGTGGAACACCTCAGCTTCAGCCAGCCGGCTCTGTTCCACTGGCAGAAAGAGCCTCTCTCTGAGGCTGATCGGGATAAAGTAGTGGTTGGAGTCACAGGGCTGCTGATGGGAGTAATCATAGCAACTACTGGTCTCATCTACTATAAACGGAAACAAACAGGCTGGACATCAGTGCAGGTTTTGGAACTCAGAAGCTGAATGAAGAAACCCCCAGATCATGTGAtgttaaacaaagaaaaacaaacactgatGGACTGATGATTTCCATCACTTTTGGGAACTGAGgaataaaacagtaacttttGTTGTTTAGACCAGACATTAGCATTAAGCTTAGATAACTGCGCTCATGTATTAATCTCACAACATGTTAGTAACACTGC

Function

GO:

id name namespace
GO:0019882 antigen processing and presentation biological_process
GO:0044425 obsolete membrane part cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74384 True 783 TUCP 0.41 3 28417733 28423955
XM_022670450.1 False 621 mRNA 0.48 3 28419430 28423939

Neighbor

gene id symbol gene type direction distance location
selenop LOC108412737 coding downstream 155733 28260497 ~ 28262000 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding downstream 267361 28085737 ~ 28150372 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 333813 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 421401 27992462 ~ 27996332 (-)
epgn NA coding downstream 661899 27731739 ~ 27755834 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 21630 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 57457 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 83183 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 101151 28525106 ~ 28532269 (-)
LOC103032242 NA coding upstream 114067 28538022 ~ 28547207 (-)
G55099 NA non-coding downstream 101507 28315953 ~ 28316226 (-)
G55085 LOC108412740 non-coding downstream 104204 28311405 ~ 28313529 (-)
G55081 NA non-coding downstream 155077 28262075 ~ 28262656 (-)
G55079 NA non-coding downstream 162752 28254320 ~ 28254981 (-)
G55030 NA non-coding downstream 248619 28168653 ~ 28169114 (-)
G55171 LOC106579932 non-coding upstream 45557 28469512 ~ 28470613 (-)
G55179 anapc5,LOC107687977,LOC107566004,LOC107703168 non-coding upstream 74702 28498657 ~ 28499078 (-)
G55180 anapc5,LOC107566004,LOC107703168 non-coding upstream 75433 28499388 ~ 28500379 (-)
G55156 gpx8 non-coding upstream 79428 28503383 ~ 28505993 (-)
G55189 NA non-coding upstream 151788 28575743 ~ 28576127 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 260284 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 374482 28026739 ~ 28043251 (-)
G54947 NA other downstream 686654 27728711 ~ 27731079 (-)
G54873 NA other downstream 944386 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 1249223 27166686 ~ 27168510 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 130772 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1320073 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1472560 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 3211526 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 3307509 31731464 ~ 31740221 (-)

Expression


Co-expression Network