G55171 (LOC106579932)


Basic Information

Item Value
gene id G55171
gene name LOC106579932
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28469512 ~ 28470613 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74392
TTAGCACTAGCTTCTTCCTCCTCGTCATCATCGAAcagtttcttcttcttcctgaGGAAGTTTGGTATGTCCGGCCGTGGCCTAGGCAGCTCTCTGGGGGTCAGTAGGGGGGGCAGGCGGGTGGACAGGTCATCAACTGTCAGTCTGGGGGTCTCGTCTCTCTCGCTTTTCCTCCGGACTGCAGCGGGGTCCACCTCCTCCCGTGGGTCACGACTGGCCTTCTGTTCCCGTAGCAGTGACCCCGGCAGGTTGGACGCGTACTTGAATCCTGGACCACGTTTTTGCTTACAGGCTTTCCCAGTCTTGCCGGCGTAGTTGCACTTGGGGCATTCCCAGCAGTTGGGCAGTTCGTCATTAACGACTCCTGCTGCGTCCTTC

Function

NR:

description
PREDICTED: lysine-specific demethylase 2B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74392 True 378 lncRNA 0.58 2 28469512 28470613

Neighbor

gene id symbol gene type direction distance location
orai1 orai1,LOC108414442,LOC106585507 coding downstream 18048 28445585 ~ 28451464 (-)
selenop LOC108412737 coding downstream 207512 28260497 ~ 28262000 (-)
LOC103039388 oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181 coding downstream 319140 28085737 ~ 28150372 (-)
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 385592 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 473180 27992462 ~ 27996332 (-)
LOC103034781 rnf34 coding upstream 10799 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 36525 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 54493 28525106 ~ 28532269 (-)
LOC103032242 NA coding upstream 67409 28538022 ~ 28547207 (-)
hnf1a LOC108412048,LOC107687971 coding upstream 262681 28733294 ~ 28741823 (-)
G55099 NA non-coding downstream 153286 28315953 ~ 28316226 (-)
G55085 LOC108412740 non-coding downstream 155983 28311405 ~ 28313529 (-)
G55081 NA non-coding downstream 206856 28262075 ~ 28262656 (-)
G55079 NA non-coding downstream 214531 28254320 ~ 28254981 (-)
G55030 NA non-coding downstream 300398 28168653 ~ 28169114 (-)
G55179 anapc5,LOC107687977,LOC107566004,LOC107703168 non-coding upstream 28044 28498657 ~ 28499078 (-)
G55180 anapc5,LOC107566004,LOC107703168 non-coding upstream 28775 28499388 ~ 28500379 (-)
G55156 gpx8 non-coding upstream 32770 28503383 ~ 28505993 (-)
G55189 NA non-coding upstream 105130 28575743 ~ 28576127 (-)
G55196 NA non-coding upstream 147154 28617767 ~ 28618377 (-)
LOC111192657 NA other downstream 45557 28417733 ~ 28423955 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other downstream 312063 28153421 ~ 28157449 (-)
LOC103039900 NA other downstream 426261 28026739 ~ 28043251 (-)
G54947 NA other downstream 738433 27728711 ~ 27731079 (-)
G54873 NA other downstream 996165 27469218 ~ 27473347 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 84114 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1273415 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1425902 29896515 ~ 29934430 (-)
LOC103027498 LOC108411246,LOC106585447 other upstream 3164868 31635481 ~ 31690808 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other upstream 3260851 31731464 ~ 31740221 (-)

Expression


Co-expression Network