LOC103035166 (six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239)


Basic Information

Item Value
gene id LOC103035166
gene name six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19902293 ~ 19906073 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235647.3
CTCCTGTACGGCGCGCTTCACACTGATTGGCAGCGCGCGAGGTGACAGCCGCGGCACGACCGTATTCAGGCCAATAGAAAAACGAAACTCTGAAGCCTTGTTTCTCCAGCCGCTTCGCTCGAGCCCAGCGTGCTGATGGAGGCCGGATATCAGCAACACAGCCAGAGCTGCTGAAGGCAAACGCACGCGCTTTTTGCAACGATTTATTCAActcttatctctctttatctcttgttctgtctctctctatctctctatccttTTCCAATGGTGTTCCGTTCCCCTTTGGAGCTTTACTCTACTCCCCTGCTCGTCCCGGGCTTTGCCGACGGCCCCGCGTTGCTGGCGGCCCGTGCGCGCTCCCCGGACGCGCGCGCTGCCGCCCTGCCGCCGCCGCCGGCGCTGCCTACGCTGAGCTTCACGGCCGAGCAGGTGGCGGGTGTGTGCGAGACCCTGGAGGAGACGGGCGACGTGGAGCGCCTGGGACGCTTCCTCTGGTCGCTGCCCGTGGCGCCACCGGGCGCTTGCGAGGCGCTGGACAAGCACGAGGCCATCCAGCGTGCGCGCGCCGTGGTCGCCTACCACACGGGCAGTTTCCGCGAGCTCTACCGCATCCTGGAGAGCCACCGCTTCACCAAGGAGTCGCACGGCAAACTACAGGCCATGTGGCTCGAGGCGCACTACCAGGAGGCCGAGAAGCTGCGCGGGAGGCCGCTCGGACCCGTCGACAAGTACCGCGTGCGCAAGAAGTTCCCGCTGCCGCGCACCATCTGGGACGGCGAGCAGAAAACCCACTGCTTTAAGGAGCGCACGCGCGGCCTGCTGCGGGAGTGGTACCTGCAGGACCCGTACCCCAACCCCAGCAAGAAGAGGGAGCTCGCACAGGCCACGGGGCTCACTCCCACGCAGGTGGGCAACTGGTTCAAGAACAGGAGGCAGAGGGACCGCGCGGCCGCAGCcaaaaacagGCTGCAGCACCACGGCCTGTCGCAGGGTGGTCTTCGGGGTCTCTCCGAGTCTAACCCGGGTCCGCCCGAGGCTGCGAGCCCAAGCGCGAGCGTGTCGAGCAGCGCGGAGCGCGCAGACGGCGCCACGGTGCTCTCCGTTACGGACAGTGACTCGGACTTCGATGTATGATGCAGAGCGCGCTCGTGGGGAAATAATGACAATGGACCtgtaaaacagacaaacaaacaaaaacagaaaaagggcCACGTGAGTGCAGCAGCTGCGCGCGTGTGCGCTCTTgctgctgtctctcgctcagaTGGAGGAAAAAGGCGCGCGCACTGGCTTTTCTGCCTTGCTTTTTTTCGCAGCGACATGCGTTTGGCTGCGAGGACGAGCGCgcgctctttcttttcctctctgtctctctttgatCTTGGgtcagtttttgtttttctgcatgTTCGTTTGTGAATAATTTTGGGACGATTTTTTTTGAAGAGGCACTAAAAGTGGAGTGGCGGAGCCTCGGGCTCTCCTCCGCTCCCTCCATCCCCCTGATTTAAAGCCGCAAAGCGGACACTTCTCCTCATTcccttcatccctccatccctcctctCTGTTCTGCAGACAATCGTGGAAGTCAAAAAGCACCTTTACTCCTCTTCTTTGACTCGACGGCAGATCAAAGTTCAAAGTTGGACTCTATCTCCAGATTTTCCAGATTTTCTATTGAATGCTCAGTGTCTGATGCGTTTTTACCCTCCCCTCCCCTACCCTAtcttacctttctctctctctctcttctctctctctctctctctctctctctctctctctctctgtcatccCTTAAACCCCcttcttccctccctccctttgtGTCCATAAGATGTCTAAATGTGTGTAAAGTGCTTTgagatttttaatgtttgttcattggttgtttttatactgtaaatggcGCTGACAGCGCGGTGTGATgggtcacttttatgcaaataaatataatttaatatgatAACTCTA

Function

symbol description
six3b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic camera-type eye morphogenesis; nervous system development; and sensory epithelium regeneration. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including hypoblast; immature eye; nervous system; neural keel; and neural rod. Human ortholog(s) of this gene implicated in holoprosencephaly and holoprosencephaly 2. Orthologous to human SIX3 (SIX homeobox 3).

NR:

description
homeobox protein SIX6-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0007420 brain development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19473 SIX3_6, OPTIX; homeobox protein SIX3/6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235647.3 True 1977 mRNA 0.57 2 19902293 19906073

Neighbor

gene id symbol gene type direction distance location
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 62711 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 231623 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 442918 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 759013 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 1160989 18730043 ~ 18741304 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 136424 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 396462 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 409943 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 635791 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 656198 20562271 ~ 20568195 (-)
G53384 NA non-coding downstream 24575 19877494 ~ 19877718 (-)
G53380 NA non-coding downstream 53228 19848820 ~ 19849065 (-)
G53379 NA non-coding downstream 67927 19833981 ~ 19834366 (-)
G53376 NA non-coding downstream 94279 19807743 ~ 19808014 (-)
G53375 NA non-coding downstream 95794 19806295 ~ 19806499 (-)
G53462 NA non-coding upstream 101874 20007947 ~ 20008162 (-)
G53467 NA non-coding upstream 126781 20032854 ~ 20033088 (-)
G53457 NA non-coding upstream 127290 20033363 ~ 20034632 (-)
G53458 NA non-coding upstream 128693 20034766 ~ 20035491 (-)
G53456 NA non-coding upstream 131046 20037119 ~ 20041892 (-)
G53382 NA other downstream 51943 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 331915 19522702 ~ 19570378 (-)
G53164 NA other downstream 1235006 18586401 ~ 18667287 (-)
G52652 NA other downstream 3312510 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3474680 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 715496 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 877665 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 911766 20817839 ~ 20819409 (-)
G53996 NA other upstream 3185233 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4435327 24341400 ~ 24351936 (-)

Expression


Co-expression Network