LOC103035481 (ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122)


Basic Information

Item Value
gene id LOC103035481
gene name ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20042497 ~ 20089372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007235648.3
TCCCCTTCATCAAGACTCTGACCCGAAGAAGATCTTGGCCTCTGTGTGGAAGAAATTTATCTGTATTTTAGGATCTGTAGAAGCGGATTTTTCGGACTATGGTTCTGTTTTGACAGTGGGCTGTCACTCCGTTATTGTGCTGCTGGTGAGAGAGTTCGGGGGGTTGATTCGGCTTTAAAAATGCCCAAGAATTCGCGCTATCTGAGCAGTGAAAGCCCGAGATCGGAATTATCGGCTCTGATGTGAAGTCCTATCTCTccgttttgtttgtttgttttttttaagaagggAAATCATTAGAAGATAAGCAGCTTCTGGGGAAAATAAACAGCGAAAAGACACAGAAGTTGGAACTGAGCAGCTCTGACATTCGTGGTATATCTTAAAAAGACGGTGTCCTGAGACATGGGGGCGTTTCTGGACAAACCGAAGACAGAGAAGCACAATGCCCACGGTGCAGGAAACGGCCTGCGCTTCGGCCTCAGCAGCATGCAGGGTTGGCGGGTGGAGATGGAGGACGCACACACAGCCGTGGTAGGGCTTCCTCACGGCCTGGACGACTGGTCCTTTTTCGCCGTGTACGACGGCCACGCCGGCTCCCGGGTCGCCAACTACTGTTCTAAACACCTGCTAGAGCACATCATCACCAACAGCGAGGACTTCCAGCCCGGTCCCGACTCCGTAGAGGGCGTAAAAAGTGGCATCCGCTCAGGCTTCCTGAAGATCGACGAGTACATGCGCAACTTCTCAGACCTGCGGAACGGCATGGACCGCAGTGGCTCCACGGCAGTCGGCGTGCTGCTGTCGCCGGAACACCTCTACTTCATCAACTGCGGGGACTCCCGGGCCGTGCTGAGCCGGGCCGCACAGGTGCGCTTCTCCACGCAGGACCACAAGCCCTGTAACCCACGCGAGAAGGAACGAATCCAGAACGCTGGAGGCTCGGTAATGATCCAGAGGGTAAACGGATCCCTCGCCGTGTCGCGCGCCCTGGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCCGAGCCGGAGGTATACGAGATCCCCAGAGTTCCAGATGAAGACGAGTTTGTGGTTCTGGCCTGCGACGGGATCTGGGACGTGATGAGCAACGAGGAGCTGTGCGAGTTCGTGCGCTCTCGGCTTGAGGTGTGGGAGGACCTAGAGAAAGTCTGCAACTCTGTGGTGGACACGTGTCTACACAAGGGCAGTCGCGATAACATGagtgttgtgttggtgtgtttccCAAATGCACCCAAAGTATCAGAGGAAGCAGTAAAGAAAGAGGCAGAGTTGGACAAGTTCATAGAGTCTCGTGTTGAAGAGATCATGGAGAAGTCCGGGGAGGAAGGTATCCCCGACCTGGCCTACATCATGCGTACTCTCTCCGCTGAGAGCATCTCAAATTTACCGCCAGGAGGTGGCCTCGCCAGCAAGCGCAGCGTTGTGGAGGCAGTGTACAACAGGCTTAATCCACATAGAGAAGAAGATGGGGACGACCAGGGAGGCGCGGCCGCCGCGggcgaagaagaagaaggcagTGCCGCCGCCCATCTGCTGGAGGCGCTGCGCCAATTCCGCCTCAGCAACCGGGGCGAGTATCGCCACGTGCTGGAGCAAGCGCTGTCCGGCTACCGGCTGTCCTGTGAGCCAGGCGGCGCCCCGCGACCGAACCCTCAAGAGGAACCCGCCTCGCCCCCGCCGTCCCCTGCCACCGAGCCCCTCAACTCTGAGGAGGGCGCCAACGAGGCGGCCACGCCGCCGCCAATCGACGAGCTCTCTGATCCCCCTGTTGCATGACCTTTGCCCTCTTTAGTAACCGCCATACCTTTAAACCCTTCTATTTATCCTGCTCACCAGCTTTCCTCTCTTCTCCCCCCCTCCCTCGCTCACAGCACTAGTCAGCTCCCTGAATGTGGCACGGCTCCCTCCCAACACAGTTAACAGTTACGGTGCaggtttatattaaatattatatatgaccactttcttgtttctacatttattgtcctttttttttttttttgctgcactgAGCATATAGGACTCTTTGTAgatctataattacagactgtagtcgtGTATCAGAGTGGAtctgatacagcagtgctgctggagttttttaaacacctcagtgtcgcTGCTGTACTGAGAATAGTCtaccaacagcatcctgtgggatAAAAGACTAGagtatagggctgcaactaatgattgaTTGTTctggtagtcaactaatctggtGATTATTTTtgcgattagtcaacgattatctCTGTCATGTCTTTTGCCTCTGCTTGCTATGGGTACTGCAACTGCAACAAtataaacagctgaacatgagatttaaatgccatttaaatgtgCAGAACAAGTGctgattagggctgcaactaatgat
>XM_007235649.3
TCCCCTTCATCAAGACTCTGACCCGAAGAAGATCTTGGCCTCTGTGTGGAAGAAATTTATCTGTATTTTAGGATCTGTAGAAGCGGATTTTTCGGACTATGGTTCTGTTTTGACAGTGGGCTGTCACTCCGTTATTGTGCTGCTGGTGAGAGAGTTCGGGGGGTTGATTCGGCTTTAAAAATGCCCAAGAATTCGCGCTATCTGAGCAGTGAAAGCCCGAGATCGGAATTATCGGCTCTGATGTGAAGTCCTATCTCTccgttttgtttgtttgttttttttaagaagggAAATCATTAGAAGATAAGCAGCTTCTGGGGAAAATAAACAGCGAAAAGACACAGAAGTTGGAACTGAGCAGCTCTGACATTCGTGGTATATCTTAAAAAGACGGTGTCCTGAGACATGGGGGCGTTTCTGGACAAACCGAAGACAGAGAAGCACAATGCCCACGGTGCAGGAAACGGCCTGCGCTTCGGCCTCAGCAGCATGCAGGGTTGGCGGGTGGAGATGGAGGACGCACACACAGCCGTGGTAGGGCTTCCTCACGGCCTGGACGACTGGTCCTTTTTCGCCGTGTACGACGGCCACGCCGGCTCCCGGGTCGCCAACTACTGTTCTAAACACCTGCTAGAGCACATCATCACCAACAGCGAGGACTTCCAGCCCGGTCCCGACTCCGTAGAGGGCGTAAAAAGTGGCATCCGCTCAGGCTTCCTGAAGATCGACGAGTACATGCGCAACTTCTCAGACCTGCGGAACGGCATGGACCGCAGTGGCTCCACGGCAGTCGGCGTGCTGCTGTCGCCGGAACACCTCTACTTCATCAACTGCGGGGACTCCCGGGCCGTGCTGAGCCGGGCCGCACAGGTGCGCTTCTCCACGCAGGACCACAAGCCCTGTAACCCACGCGAGAAGGAACGAATCCAGAACGCTGGAGGCTCGGTAATGATCCAGAGGGTAAACGGATCCCTCGCCGTGTCGCGCGCCCTGGGCGACTACGACTACAAGTGCGTGGATGGAAAGGGACCCACAGAGCAGCTGGTGTCGCCCGAGCCGGAGGTATACGAGATCCCCAGAGTTCCAGATGAAGACGAGTTTGTGGTTCTGGCCTGCGACGGGATCTGGGACGTGATGAGCAACGAGGAGCTGTGCGAGTTCGTGCGCTCTCGGCTTGAGGTGTGGGAGGACCTAGAGAAAGTCTGCAACTCTGTGGTGGACACGTGTCTACACAAGGGCAGTCGCGATAACATGagtgttgtgttggtgtgtttccCAAATGCACCCAAAGTATCAGAGGAAGCAGTAAAGAAAGAGGCAGAGTTGGACAAGTTCATAGAGTCTCGTGTTGAAGAGATCATGGAGAAGTCCGGGGAGGAAGGTATCCCCGACCTGGCCTACATCATGCGTACTCTCTCCGCTGAGAGCATCTCAAATTTACCGCCAGGAGGTGGCCTCGCCAGCAAGCGCAGCGTTGTGGAGGCAGTGTACAACAGGCTTAATCCACATAGAGAAGAAGATGGGAACGGAGGCGACCTGGACGACCCCTGGTAACCCCCAGCCAGCGCCCGCGACTCCGCCGGTCTTCACCTGAGAATGTCCGCAGTTCACACAGAAGAAAATCCTTTACtaacacttcttttttttttgtttgtatttttggttTTGATTCCAAGAGATTCATAGGAACTGTTTTAAAGATTCTGGAGAGCAAACACGAaccaacacagacacacacacacacacacacacacacatacagaaaaacacacacttgcacacacaaatacacacttcTTTGGAAGAGGAGGAATCTGCAGAGACAGCGAGATTTTTAGGACTGCTGCGTTGTTTGGTGTAGAAAGAGAGATGATTTTCAAATTTTTCTTCCCCCCCGATCATTTCCTTATCCACTAACTGAGAGTGACAAGAAGACTGAAGATTTATTTCCCCTCCCCGGAGAGAGTGATGATGTCTGTCTGTTTGAGGATTGGTGGCGTGACACTGTAAGAGATATAAAAGCTGTAGGAGCTGTGGGACTctgcagaagagagagagagaaagagagatggaactAAGCAGGTGGACGTATGGAGGGGGAAATGGAGTTAGAACctttgttctgttctgttgcAGGAAAAGCTCTAACGGAGATACGGAGATTCTTCTGCACCGCCTGTATATTAATCACCTGTATCTCAGCAGACACTGCTCTCCTCCCCAGCCCAAAGcatgtgcagcagcagcagcagcttctgaGAGACCAGACCAGATAAACCACACGAACCACCGAACACCCTGACTCGACTCTCGAATCTCCAcatttcctctcttttctcagAT

Function

symbol description
ppm1bb Predicted to enable magnesium ion binding activity; manganese ion binding activity; and phosphoprotein phosphatase activity. Acts upstream of or within negative regulation of transforming growth factor beta receptor signaling pathway. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. Orthologous to human PPM1B (protein phosphatase, Mg2+/Mn2+ dependent 1B).

NR:

description
PREDICTED: protein phosphatase 1B-like isoform X1

GO:

id name namespace
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway biological_process
GO:0006470 protein dephosphorylation biological_process
GO:0030145 manganese ion binding molecular_function
GO:0004722 protein serine/threonine phosphatase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K04461 PPM1B, PP2CB; protein phosphatase 1B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007235648.3 True 2431 mRNA 0.53 6 20050244 20089372
XM_007235649.3 False 2343 mRNA 0.52 6 20042497 20089372

Neighbor

gene id symbol gene type direction distance location
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding downstream 136424 19902293 ~ 19906073 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 202915 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 371827 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 583122 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 899217 19122620 ~ 19143280 (-)
trnai-uau_7 NA coding upstream 213163 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 226644 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 452492 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 472899 20562271 ~ 20568195 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding upstream 483040 20572412 ~ 20580604 (-)
G53456 NA non-coding downstream 605 20037119 ~ 20041892 (-)
G53458 NA non-coding downstream 7006 20034766 ~ 20035491 (-)
G53457 NA non-coding downstream 7865 20033363 ~ 20034632 (-)
G53467 NA non-coding downstream 9409 20032854 ~ 20033088 (-)
G53462 NA non-coding downstream 34335 20007947 ~ 20008162 (-)
G53470 NA non-coding upstream 1506 20090878 ~ 20100795 (-)
G53473 NA non-coding upstream 14534 20103906 ~ 20112140 (-)
G53502 NA non-coding upstream 223756 20313128 ~ 20314046 (-)
G53500 NA non-coding upstream 224922 20314294 ~ 20315583 (-)
G53499 NA non-coding upstream 253023 20342395 ~ 20352851 (-)
G53382 NA other downstream 192147 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 472119 19522702 ~ 19570378 (-)
G53164 NA other downstream 1375210 18586401 ~ 18667287 (-)
G52652 NA other downstream 3452714 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3614884 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 532197 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 694366 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 728467 20817839 ~ 20819409 (-)
G53996 NA other upstream 3001934 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4252028 24341400 ~ 24351936 (-)

Expression


Co-expression Network