LOC103025356


Basic Information

Item Value
gene id LOC103025356
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19437633 ~ 19459375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007239985.3
gaatagatagatagagaaagagggagagggagggagagagagagagagagagagagagggagtgggcACAGAGAGGGTGTGGATACGTTAAGTTTTGGTGAGAATGTTCAGAAAGAAGTGggtgaagagagaaagagaaagatagagggaaggaaagagaggggaaagagacagaaagagagagagagagagaaggaaagatagcgtgagaaacagaaagatagagagagaaggaaagataGCGTGAGAAACAGAAGTAAGTTTTAAGGTTAGTAGATTTTGGAGTTTCCAGAAGTAGCCAAAGCTGGACTTGAACCGAGGACCCCTCCACTGCCGGTGTTGGTATCTACCCTGGGCAGCAGCAGAATGGTCCTAAAGCTGCTAGTGGCCATGCTGCTTCACCCAGCACTCTGCCATGCTGGGCTGAGGGCCAGGGACCCTGATGTGGAGGAGGAGATGCATGTGCTGAGGGACTCGGAGCCAGGCACATTTGGTACAGCTCATTTGCCCGTACCTCATGGGCATCAGCATGGGCATGGGCACCACAGCACAGCTGGACCACTGCAGCAAGCCCAGAGCATTCCACAGAGTCCACTGACCCCAATGAGGGGCAGTTCACAACCGCCTGCACGGACTGGGAACTGGTGTGCGGTGGTTCACCGGCGGGTGGTGACGATGGCAGTGCTGTGTGGAACTGAGACGTACACTCAGAAGACGGTCAACCCATGTAGTAAAGGTGACCCTGACTGCCAGATATACAAGTATCAGCTCTCATCACGCCCGGTCTACAGACAGAAGCAGAGGATTTTCACAGCCCTGCACTGGAAGTGCTGCCCAGGTCATGGAGGCCACAACTGTGAAGATACAGAAGAAGAAACTCAGTCCAGTAAGGAGCACACCCAGAACACCCAGAACGACAACCATTCTGGAGAGGACGACTCAGGTGGTGAAGAGACTGACCTGCTGGAGGATGGAAGCTGGGATAATGGTCCAGTTCAGCCGCCTCCCAGCGTCCCACTGTTTCCTGTTCCAGGGAACGTTGGTTCTGGTGGAACAATCCCTCCCACTGGTTCTCTGACGTTCATGGACTCGGTCACTCTCTTGACGGTCCATAAAGTGTTTGCAGCTGTGATGACCCACCTTCAGCCAGTGCTGGACGGCTTTAATCACACTCTGCAGCATCTGTCCAGCGAGGTCAAGGATCTGTCCATGGatctgcagaagctgaagcaTGAGAAGAAAGAGCATCTATTCAACAATAGACAGACTCACACTGGAACAATAGAGGAAAAGCTGGAGGACAACAGCCTTCAGATACGCCAGATACAGTCCCAACTCCACTTACAGCAAAAACAGGTAGAGGAGACAATAGAGTTCCAGCAACAGCAGCTACAGCAGAACCTGATGAGCCTAGAGGACAATATTGACCTTCGAATGAACCGGAGTCATGAGGGTCTACAGGTGAGTCTGCAGTCTCTATGTCAGTCAGTGGAGGAGATCAGACGTAGTCAGCAAAATCTGGAGGAAGTAATGGAGGCAGAATATGCTCCCTCGGCTCGTGTGAGTGAAGGCCCGCCAGCACCGGTGTCTGGCATGTGGGAGGCCATCAGTAGATTGGACCAGAAAGTGCTGAATAACACTGCACAGCTCAGTGCCTTGTCTGAGAACTCCACGCACTTGATGAACGCTGCCCAGAAGTTGGACCACTGCCTGCAGAACCTGAGCACGAGACTGGATGGGGTCAGCCGAAGCTCGGAAATCCATTTTGCGGAAACTGGGCTGGAACTGGAGGCGACTAAAGTGGCTGCGTTCAAAAGCATCAACGAGTTAGCGGCTAATCTCAGCAGCCAGGAGAGACATCTGCGGGAGCTTGAACTTTACTTGGACAGTATCTATCAGCAAGTCCAATCAAGAAATGACCAAACCACCAACACAGTTGCAGAGGATTGCAGCTGTCAAGAAATTCAAGAATCGTTGATTTCGTTGGAACTGAAGGTGGCCAATGTGACCGACCTGGCCAAAGAAAACCAATACGCCCTGGAAGATGCAGAGGCCAAGAAGAACCAAGGCCTTTCAAGTCCTTGGGCCATGCAAGTGGAAGATCTTCATCAAGCCTTGTTGAGCGTGAAGGAATCGTTGGCATTTGAGCAAGCGAAGAGCAGGACTCTTAATGAAGACTTATCCCAATTGAAAGGCTCGCTCTTGGGAAGCCAAAGGGAGATACTTGAGCTCAACGAGAGTTTTGGTGTCAAAGCTACTGAGATTAAACACCTCTCTGCATCTTTCTCGTCCCTACTCAAGGATGCAATACGTCACTCTGAGGTTCTGGAGATACTTTTAGGAGACGAGGTCATGGAGTTCTCAAGCTGGTCCAATAACCAGCAGAAAGAGCTGTCCATTCCAGTTCTACTGCAGAGATTAAAGCTCATGCAAGACAAGATGGAAACCCATGAGATTAGCCTGGAATCGTTGAGAATAAAGCAGAAAAGACCTGAAAAAGATCATCACCAGATGACCAGCGATGACCCGGTGGCATTCTCAGATTGGGGCCTCATTGACAACCAAGGAAGGAACGTTGAAGATCATCATGAAGATCACTACGTACCGCTGAGTCCCGCCCTCGAAGAAGATAATGATGACGACGGCGGGGACTACTCAGTCAGCGACTTCTGGAGTTTGGGAAGGGAAGTGGAGGAGCTGGCGAACAGGATCATTCAGATAGAACAGAAACCCTGCAACTGCACTGCCGACCCCGGTGGCTCAGTGGAGGAACTGCAGGCGGAGGTCGCCTCCCTACGACAGGATCTGGGGGATCATCTGAGAATCTTCCAGAATTTGTTCAGCCACACAGAAGAGCTGGCCAGGGCTTCCCACAGCCTCAACTTGGAACAGCTGTGGACGATGCTTTCCAGGAAGGacaggaagaaaaagaaagggcaGACTGTGAAGGAGAAAGGAGTGGAGTCGAGTGGAATACGCAAGAAAAGAAGCATTGGAAAAGGGTCACCATTCTCTCAGCTTGCATTCGTCACAACTTTGCGAGACAGGATCAATGAAAAAGACACAATATTTGTCTCTGAGAAGGTGTCTCTAAACCATGGCAATGCTTACAGACCTTCTATAGGAGAATTCCAGGCTCCTCAGGCTGGTTTCTACCCCTTTTTAGTGACCTTGGACTTTGAAACAGGCCCTGGATTGGCTCAACTAAGACGTGGCACGGTACCCGTGGCCTCCCTCAGACAAGTTAAGGGTACTGAAGGACTGTTGAGCCAAGCAAGTCTCCTGAAGCTTCAGGAAGGTGATAAAGTTACACTGGAACTGGTGAAAGGAAGACTACGCCAAGGACAGCCTAATGACAATACACTGTCTGGGGTTCTGCTGTTTGGAACTGAAGACCTGGACAAGAGAACTGAATCAGAACCGGTTCTATAAGAAAAGGCTCTGGCCAGTCAGAGGAATTAACTGTGGCCAAAACTGCCAAACACACCAAAGACTTTAGTACACAAAAAGACTCCATATTGGATTCTAAACTGAAGAGCTAAGCCAGATTTGTTGTGCTTGAGTGCCTCCTGTGGCCATCTGCAGAACTGCAAaaaacaacccatacagatttcACCCAGagacatacaggtgcatctcaaagaATTAAgattatcattgaaaagttgcttt

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0048731 system development biological_process
GO:0002520 immune system development biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:0007275 multicellular organism development biological_process
GO:0048856 anatomical structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0001944 vasculature development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007239985.3 True 3672 mRNA 0.50 8 19437633 19459375

Neighbor

gene id symbol gene type direction distance location
LOC111192707 NA coding downstream 294353 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 696329 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 709400 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 748032 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 788758 18644455 ~ 18648875 (-)
LOC103036701 LOC108430450 coding upstream 146180 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 223016 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 442918 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 583122 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 843160 20302535 ~ 20302628 (-)
G53343 NA non-coding downstream 1544 19435683 ~ 19436089 (-)
G53342 NA non-coding downstream 4145 19433036 ~ 19433488 (-)
G53338 NA non-coding downstream 38425 19398815 ~ 19399208 (-)
G53316 NA non-coding downstream 106233 19304310 ~ 19331400 (-)
G53317 NA non-coding downstream 136534 19269530 ~ 19301099 (-)
LOC111192626 NA non-coding upstream 44235 19503610 ~ 19506504 (-)
G53357 NA non-coding upstream 137400 19596775 ~ 19602402 (-)
G53358 NA non-coding upstream 141017 19600392 ~ 19655844 (-)
G53361 NA non-coding upstream 261767 19721142 ~ 19795467 (-)
G53372 NA non-coding upstream 339810 19799185 ~ 19799391 (-)
G53164 NA other downstream 770346 18586401 ~ 18667287 (-)
G52652 NA other downstream 2847850 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3010020 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3080673 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 3210459 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 63327 19522702 ~ 19570378 (-)
G53382 NA other upstream 390575 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1162194 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1324363 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1358464 20817839 ~ 20819409 (-)

Expression


Co-expression Network