LOC103039388 (oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181)


Basic Information

Item Value
gene id LOC103039388
gene name oxct1a,oxct1,LOC108414057,LOC107711896,LOC107686394,LOC107667551,LOC105894181
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 28085737 ~ 28150372 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247169.3
CCCCTGTTCTCTTAATGTAATCTTATTCTCTGTCATTgcttcctctctcgctctgtgtttctgtgtgtttggtatAAAGGACATGGCGCCTGTCTCGACGTTGCTTCAGGCGGGGATTCGGCTCAGGCTCCGCTGCCTCCCCAAGGCATGTAGCTGTTATTTCTCCACCGCCCCCCGCCGACCATCGCACTTCTACCCCAACTCCACCGACGCAGTGAAGGACATTCCAGATGGAGCCACCATCTTAGTCGGAGGGTTTGGACTGTGTGGTATACCAGAGAACCTCATTAACAGTTTACTAAAGACCGGAGTGAAGAGTCTGACAGCAGTCAGTAATAATGCCGGAGTGGATGACtttggtctggggctgctgctGAAGACGAAGCAGATAAAGCGGATGATCTCATCTTATGTGGGAGAGAATGCAGAGTTTGAGAGGCAGTATCTGGCCGGAGAGCTGGAGGTGGAGCTAACACCACAGGGAACGCTGGCTGAACGGATCCGGGCTGGAGGGGCTGGAGTTCCAGCTTTCTTCACGGCTACAGGATATGGCACACTCATCCAGGAGGGAGGATCACCCATTAAGTACAATAAAGATGGCACTGTGGCCATTGCCAGCGAGCCCAGAGAGGTGCGTGAGTTTGGAGGCAGGCACTTCATTATGGAGAAAGCCATCACTGGAGACTTTGCCCTAGTTAAAGCATGGAAGGCAGACAAAGCAGGAAACATCATCTTCAGaaaaacagctaggAACTTTAACCAGCCCATGTGTAAAGCGGCCAAGGTGACGATTGTGGAGGTGGAGGAGATTGTAGATGTTGGGACATTTGCAGAAGAAGACGTTCACATCCCCAGTGTTTACGTTCACCGCATTGTTAAAGGGAACAATTATGAGAAACGGATTGAGAGACGCACTGTTAAGAAAGCCCAGACTGGGACAGCTAAGCCGAAGAAAGATTCGGACGTGGTGAGGGAAAGAATTGTACGCAGGGCAGCGCTGGAGTTTGAGGACGGCATGTATGCTAACCTGGGCATTGGCATTCCCATGCTCGCCAGTAACTTCATCAAACCTGACATCTCTGTGTACCTGCAGAGTGAGAACGGCATTCTGGGACTGGGTCCCTATCCTACAGAAGAAGAAGTTGATGCTGATCTGATCAATGCAGGGAAAGAAACAGTGACTGTCCTCCCTGGGGCGTCGTACTTCTCAAGTGATGAATCCTTCGGCATGATCAGAGGGGGCCACATCAATCTGACTATGTTGGGGGCGATGCAGGTGTCCAAGCATGGTGACCTGGCCAACTGGATGATTCCTggtaAGATGGTGAAGGGCATGGGTGGAGCGATGGACCTGGTGGCAAGCGCTGGGACGAAGGTGGTTGTTACCATGGAGCACTCTGCAAAGGGAGGAAAGCACAAGATCCTGGAAAAGTGCAGTCTGCCACTGACGGGTAAAGGGTGTGTCGACCGAATCATCACAGAGAAGGCTGTGTTTGATGTGGACACGAACAAAGGCCTGACCCTGATTGAAGTGTGGGAGGGGCTAACTCCTGAGGATATCAGAAAATGCACAGGGGCAGATTTTGAGGTCTCTCCTAACTTGAAGCCAATGCAGCAGATCTGACCTCCTGAAGCTGAAGTCTGCTAGCTCTCAGAACCAGGTTTTACACAGAACCAGACGAGAACAATCTGCCACGAGCCCACCGCTCACCTTCACCCTGTTACAATAAAGGAGCAGTTCAGTGAGAAATCGATTGATCATGATTGATTAGTTGATCAGCCGGTAGGTTTGGTATGTGACTTGGGTCCCTTATGTTATAACAGAAGATGATAGGCTAACATCACTAGGAAACATGGCAATTAAGACTGTTATCGAAAATTATTCAGATAAGCAATAAAGCAGCATTCCACATTTAAGCTAAATAGTATGATCAGCATCATAACACCCCGCTTTGTAGTGCTATTCCACTTCAATTGAAGCACAGTATGTGGAGTAATACTGTTAGAGTTATACAGTGGTTAGAGTTACTGCAATGTTCAGATGACAGAAAAGGAGATTTCACACCTTCCTTCCTTGGTCCGGACCTTCTGACTTTTTAGATTGGTACCTAAAATAAAAAGCCATGAACCATGGTCCGTGCCAAAGGGCCTAAATTTGGTCAGACAAAAAGAGCTAGTCTAGCTCTGGATCATCTGAACCATGGTGCCTCCGAAGTCGAGGCAGGCAACGGTCACatgttaaacaatagaagaagaaaaagaactggtgttgtgctgaaatttgACCCATTTTTTGTGTGCATGCAGCAGtctgggtacaacagattacacctgtagttactgtaaatgtaaataaacccttatttataaacagcaaTAAATTGAATCCAAGGGGAATCTGTTGAATTAATTCTCCTGTGTCACACCTGTAAACTTTAAGGGAGGAGGATTTTAGAAGggaggcagaatttggcacaacacctacATTCATCAAACCAATCAGGTATAGTTCATTGTTTGTGAGCAGTGTAAGCCTAGCATTTTCAGTTATATACCAAGTGTGTTTTCACAATTATAGTTTGCTGTatttggtctgaatcagttaacaAATTTGTTAAGTTGGAGCTTTTTCCCCTCCTTGGATTGATTTGGTTTTGTTTTACACAAGGAAAACCGCGAATGCAACAAAACATATGTCACAACAGTGCAAGCACATTCTCTCCTCCTATTGGTCAGAGGTGGAGCCAGaaattaaatacagaaagaaagactaGTGCACAAGACTAGTTCATTGTACTTTAACATATGGAGCAGTAGCAGAGATGACATTTCTTCATAggtgtagtaatagtagttctctgggtaataaatcagaaaaactgcacctgaacagcttaACCTGGGTTTCTGTACAGTTGTTTTATTCCACACCAGAATATGATTACTGTATTCAGATCTTTCTAAATGATTAACACCAAGtgtgaaaacgaaccaaatctAAATCAGATGCAGCTGATCGACTGCGCTCAGTGATGAATCATAGTACCTATATTTTACACTGAACTTCTCCTTTAATATCCATGAATGTGTGacaaagagagtgtgtgtgtaagagcgtgcatgtgtgtgtgagagagagtgactgAACCATTGCTGCACGGCGTTCTGAATACAGAGCAGAGTAAAAGGTCAGGCGATGATTAACGTGTCCGCGGCTCATACAGCCAAATCAATACATACATGATAAACATTGTGAAACTGATAAAGTTCATTGTTCAGTGTTGATAATAAACTCCATCACCTTCATCACAGTGGCTCGGCTTCATCAGCTCCGTAACGCATCTCTGCATCTGTCCCTCGCAGCAGGCCTTCTGTTTTCTTATTAAAACCACCGTTAAAGTGTGTTTGTACATAATAAAAGTTTTGTCTCATTGAGCTCAAA

Function

symbol description
oxct1a Predicted to enable 3-oxoacid CoA-transferase activity. Predicted to be involved in cellular ketone body metabolic process. Predicted to act upstream of or within ketone body catabolic process. Predicted to be active in mitochondrion. Is expressed in somite. Orthologous to human OXCT1 (3-oxoacid CoA-transferase 1).
oxct1 Enables 3-oxoacid CoA-transferase activity. Involved in cellular ketone body metabolic process. Located in mitochondrion. Biomarker of carbohydrate metabolic disorder.

NR:

description
PREDICTED: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like

GO:

id name namespace
GO:0046952 ketone body catabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0008260 3-oxoacid CoA-transferase activity molecular_function

KEGG:

id description
K01027 OXCT; 3-oxoacid CoA-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247169.3 True 3442 mRNA 0.45 17 28085737 28150372

Neighbor

gene id symbol gene type direction distance location
plcxd3 plcxd3,LOC107667565,LOC107711897,LOC107686393 coding downstream 1817 28051815 ~ 28083920 (-)
LOC103029383 LOC106585208,LOC102795852 coding downstream 89405 27992462 ~ 27996332 (-)
epgn NA coding downstream 329903 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding downstream 331779 27734844 ~ 27753958 (-)
LOC103030338 LOC108413054 coding downstream 426432 27604871 ~ 27659305 (-)
selenop LOC108412737 coding upstream 110125 28260497 ~ 28262000 (-)
orai1 orai1,LOC108414442,LOC106585507 coding upstream 295213 28445585 ~ 28451464 (-)
LOC103034781 rnf34 coding upstream 331040 28481412 ~ 28492730 (-)
LOC103033816 NA coding upstream 356766 28507138 ~ 28516635 (-)
LOC111192658 NA coding upstream 374734 28525106 ~ 28532269 (-)
LOC111192655 NA non-coding downstream 77068 27999630 ~ 28008669 (-)
G54965 NA non-coding downstream 147367 27937122 ~ 27938370 (-)
G54954 lipg,LOC107667539 non-coding downstream 318131 27762628 ~ 27767606 (-)
G54920 NA non-coding downstream 365159 27719653 ~ 27720578 (-)
G54916 NA non-coding downstream 370816 27712472 ~ 27714921 (-)
G55029 NA non-coding upstream 13441 28163813 ~ 28165094 (-)
G55030 NA non-coding upstream 18281 28168653 ~ 28169114 (-)
G55079 NA non-coding upstream 103948 28254320 ~ 28254981 (-)
G55081 NA non-coding upstream 111703 28262075 ~ 28262656 (-)
G55085 LOC108412740 non-coding upstream 161033 28311405 ~ 28313529 (-)
LOC103039900 NA other downstream 42486 28026739 ~ 28043251 (-)
G54947 NA other downstream 354658 27728711 ~ 27731079 (-)
G54873 NA other downstream 612390 27469218 ~ 27473347 (-)
G54854 dhx37 other downstream 917227 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 1306023 26761132 ~ 26779714 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 3049 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 267361 28417733 ~ 28423955 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other upstream 404355 28554727 ~ 28600510 (-)
kiaa1671 NA other upstream 1593656 29744028 ~ 29840753 (-)
LOC103046862 LOC108410878 other upstream 1746143 29896515 ~ 29934430 (-)

Expression


Co-expression Network