LOC103044306 (pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618)


Basic Information

Item Value
gene id LOC103044306
gene name pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27222840 ~ 27236161 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247186.3
AgcgagcagcagcagcgggcCAGCCGCTAGCACACCGACCGAGCACGGAGCACCGGGGCGATGGAGCTCAGCGCGGCTTTCTCGGTGTTTGGAGGCGTTTAGAGGACTGGGGACACCGCTGGAGTGTTAGAGTATGTAGGTTAAAGTGTTTCTGActgagaaagagaagaggaggaTCGTCTTGTCTGTGGAGGTTGCTTTGCGGTGGAGGTTATTACTGGGACGCTCCGCTCGCGCTCCTGATCAGGACACTGTGTTATTATCCAGCGCGAGCTGCGGGACTGAGCCGTGTGGACTGTGGTCGTGGTCAGTAGGTAGGCGAGCCCCGGGAGCAGGTCGGTTCAGGTGGGGCTGCTGCCGCTCGGGTGATGTTGTCCGTACTGTCCTACGGTAGACTGGTCGCCAGGGCTGTGATCGGCGGCCTCTCTCAGACCGACAGCCGCGATTACAGCCTGGTGTCGGCGAGCTTTGGGTACGGGAAGGACTTCCGAAAGGGGATTTTTAAGAAAGGCATGTGCTACGGCGATGACGCCTGTTTCATTGCCAGACACAGATCTGCGGATGTACTAGgTGTGGCTGATGGTGTTGGTGGTTGGCGTGATTACGGAGTAGACCCCTCACAGTTTTCTGCAACATTAATGAGGACATGTGAGAGGCTGGTGAAAGAGGGACGTTTTGTACCCAGTAACCCAGTGGGGATCCTTACCACCAGCTACTATGAGCTTCTTCAAAACAAAGTACCTCTACTAGGAAGCAGCACAGCTTGTATAGTGGTGCTGGACAGACAAAGCCATCGGCTTCACACAGCGAACCTGGGTGACTCAGGTTTCCTGGTTGTTCGAGGAGGAGAAGTAGTTCACAGGTCCGATGAGCAACAGCACTATTTTAATACCCCCTTCCAGCTTTCAATTGCTCCCCCGGAGGCAGAGGGCTCTGTCCTTAGTGACAGTCCTGAAGCTGCGGACAGCTCATCTTTTGATGTTCAGCTAGGAGACATCATCCTCACAGCAACAGACGGACTCTTTGACAACATGCCAGACTACATGATCCTACAGGAACTCAAAAAGCTCAAGtacaCAAACTATGAGAGCATCCAGCAGACAGCAAAGAGCATTGCTGAGCAGGCCCATGTTTTGGCATATGACCCTAATTACATGTCCCCGTTTGCGCAATTTGCCAATGACAATGGACTTAATGTGAGAGGAGGAAAGCCAGATGACATCACGGTTCTGCTGTCAATTGTAGCGGAGTATACAGATTGATGCTTGTTCCGACAGCTCCTCTTGTTGTCTTCCTGTTGTTCACTGGAGTGGTCATTGCTTCCTGCTGGCAGGACGAGggctaatgattttttttcccctttgttTGGCAAGGATCTGACCCTCAACCACTTCCATGGGTTTTAGCATATCTTTCTCATCATTCTCATTCTGTTTTCAGTTAATACCTTTCCCCTAATCATCTGGCTACAGAGGAGATAATAGTCCAGTTTTAGATCTTGATACGAACCAACTAAAATGAGTCAGCTAGCATTGTATCTCTCTGTGCTGTTCTTGGACTCGTGAGAGCTTTTCATGAGGGCACTGCAGGTGCCAGTTCACAGTTCTTTCAATCTTAATGGTGAACTATTAGCATGTATCAGCAAGTTTTCTAAAGAGAGGTGAAACAGAAATGAGATTTTAAAGATTGAGGGGTTGGAAACCGACAAATGAGAAAAGCTCAGGATGATGATAGATCAATATGGTAACATAAGATACATCTCCTAAGCAGATATGCAACATGCATAGGATTAACCAGTGGGTCTATCACAAAAATGGCCATTATGCCAGTGCTGGACTACCTGACACTAGGGAGTCTACAGAAGAGATGGGGATAAATATGTTCCAGCACAAATGGCAAAGCCAAGGGAGATCAGCAAACCATCAGTTTGGCCTGTTTATAAAGCCTTATCTTCAGCCCAAATCTAATCAGCTCTTCCTAAAGGAGAGGGTTCCCCTAATGAGTTCCTCTAATAGACATCTGCTATGATTTGAGCCTGTTAAGTTTAAAAGGAAGTCTCTTGTCAAGCCAATTTGGCTAAGGCCCACCTCACACATATACAGATATAAAAACATagcctttttatttgttttggccTCCCATTAGTTTTTTTGGCTTACTTTTGGCAGTCTTCATGCGTGGGTGAGCAAAAGTCAGCTTTTAGACAAGCTGATATCATGCAGAACTTTTATTGTAGACTAACGATTGGGTTTACACTTTTGTTACACATTACTCACACCTCAGTTAATCTATTGAACATGTATAACtcgttttacaaaaaaaatcaaactctGTGCAGGAGTATGTGGAAGATTCAGATATGGCAGTGCCACCATACAAACTGCTTTCACAATCTGCGTAAAATTCACTGCAGTACTTTCAAACACATTATTGGTAATGggatttttttacagagctcaGCACACATATGGGGAATAGTAGCTATTCTCAAAATCTTGgtttaatatgttaatttacaaaaaaattatttatccAATCTCTGTGACAATACTGCAGTTGCTACTGACTGTATGTGCTAATGAGTGTGACCACAGATAGTGTAACTAGCATTTACTCCACACCTACACAACCCAACATACATTATGTGCAAAAGCGATAACAAGATAttcccttttctctttttgttgaCCTTCCCTTGCCACATAAAGCCTCTCCCACGTTTGCCTAACTGGCAACTGCTGCCTATACCAGAACTGGTGTATACAACAGCTTATTTAGGTCTATTTTGGACATTACACTTGCACACCCACAGCATGATCATACAGGCAGTTTAGAAGTGTTGCAATGTTATCTTGCAGACAATTAGCTTTTTTAGAGAGACTCCTGAAGGCAgtcatattaaaatgttttctaaaaTATCTGGATGTGTGGATGGGGCCTACATCTAAAACTGGCTGCATGTACAATTCAGGCATAGCTAATCTAATTAACCACCAAATATAACTTTCAACGAAGTTCAATACGTTAAATATTTGGTTGAAATCTATACTTGCTGAATAGGTTTTAGTGTTATTTGGCAAAAGGTTGGCCAAATAATATGAACAGCCATGAATCTGTAACGATGTATGCATGACACCACATTTCAGGGTCCAGGGCAAAGTGGTGTAGTTACTTTGCAAAGGGAGACAATTGaaatgttcttgtttttccgtctttttttaatattaaatattttttaatatttattgtatcAGACCAGTGTTAGTACCCTTATCACCTAATGTGAGACATGAGGTATGTAACAATGACAATGCAAGAGACTGCAAAGGTTTAATgtaaagaaggaaagaaatCTTTTAATGCTATGTCAACCACTTTGGAGGTTCTTATGCTATTGTGAAaggtgtgtgcgtgagtgtgtgtttgcacaAATGTGCATATACAAActtgctgtatatttatatatgatgtATGCATTTGGCAAGTGTAGGCTATTACACATCAGACATTGTATATGAAAGTAACCTATATTTGATACGTTTGTGTGGgttctgtgtttaaaacatttgttttcttgctctgattttttaaacttcattttaatttCCTTGAGGTGTATACTGTTAACGCACAAGGCTAATGCTAGCATCTGTGAATGCTTAAAGTGGATATGTGATGGGTCATATGATCtaataaaggtttatttttgta

Function

symbol description
pptc7a Predicted to enable metal ion binding activity; protein serine phosphatase activity; and protein threonine phosphatase activity. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Orthologous to human PPTC7 (protein phosphatase targeting COQ7).

NR:

description
protein phosphatase PTC7 homolog

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG:

id description
K17508 PTC7, PPTC7; protein phosphatase PTC7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247186.3 True 3711 mRNA 0.43 6 27222840 27236161

Neighbor

gene id symbol gene type direction distance location
srrd NA coding downstream 11807 27207308 ~ 27211033 (-)
cldn5 cldn5 coding downstream 148822 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 173778 27041506 ~ 27049062 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 187866 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 194346 27024622 ~ 27028494 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding upstream 4829 27240990 ~ 27259800 (-)
LOC103030651 cit coding upstream 271542 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 368710 27604871 ~ 27659305 (-)
epgn NA coding upstream 495578 27731739 ~ 27755834 (-)
LOC103042060 LOC103042060,LOC107565988 coding upstream 498683 27734844 ~ 27753958 (-)
G54716 NA non-coding downstream 162389 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 248748 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 249847 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 412172 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 473561 26749076 ~ 26749279 (-)
G54869 NA non-coding upstream 6919 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 175073 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 426165 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 476311 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 483492 27719653 ~ 27720578 (-)
G54854 dhx37 other downstream 54330 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 443126 26761132 ~ 26779714 (-)
ccl28 NA other downstream 646415 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 652901 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1660701 25549350 ~ 25562139 (-)
G54873 NA other upstream 233057 27469218 ~ 27473347 (-)
G54947 NA other upstream 492550 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 790578 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 917260 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 1181572 28417733 ~ 28423955 (-)

Expression


Co-expression Network