srrd


Basic Information

Item Value
gene id srrd
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27207308 ~ 27211033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247187.3
GTCTCTTGACAtactttttacatatttttgtattttgtcattaattaaaaaaagctaaGTTCTTTCCTCAGAAGGTCTTTGGTATGGCTTACTAGGAACCGCATCGCAGGAACAACACGGACCTGTTAAAATGTAACACCACAACACTGCAGCAAGCGGCAtgtgagagaagaagagagtaCTGGATTGGTTATAGTTGTGATAGTGGTGTTTTAGTGGGAGATGGTGGTGCTGAGGTTAAtctgtgtgtggtggtgtgttagtgatggAGAGCAGCGGTGAGTGGCAGTGTGTGCGGCGGGGTAAAAGAGCAGCACGGAGAGGAAAAGCTGATCAGTCCCGAAacccaacagcagcagctcctgAACCCGCAGACAGAGAGCGAGACACCCGCAGAATAACTGAAGCAGTTAATGAGCTGAGATGTGAAGATTTCTGGCTGGAATGGCGAGATCTCCTTTCAGGCTGTCTCGTGGGGTCTGGCTGCAGTAGCAGTAAGGAGAACACAGTGGGTGAATGgcagctggagtgtgtgtgttatggccTGGGCAACTTCTCCTCCTGCGTGTCGGCCAGGTATCAGCTCGCCATGCTGCTACTGCTGTTTGAGGCTTTGCAGATTCCTGTGGGCCAGTGCAGCATGTATGACCCGGTGTTCACTGTGACAGAGTGCGAGATCCTCAAAGAGCTGGGCTTCACTGTGCTGACTGAAAACGAGGAAGGGAAACGAGCAGTGTGTCATCCCACCTTCTTCTACTTAATGCACTGCGGAAAAGCTCTGTACAACAACCTGCTATGGAGCAACTGGAGTCCACAAGTCCTGCCAAACGTCATCGTTATTGGCAACAGTTTTCTTGGCATTCAGGAGAGgATGCTTCAGCGGGAGTTTGAAAGAGATTACAACTTTCTCTCACACATTGTAAACGTGTGTGAGGAAACAAGCCTGCCCTGTTCACAACGCTTCATGGATGTGTTTAATGACAGTGCACTCATCCAGTTCCCAGCAGAcaaacttcagaaacttccagaaTCCATCTGGACTGATCTTACAGAACCCCAGTACCAGCACTGTCATGATCTGGAGATCATCCAGAGAGGCAGTAGGCATTTACAGGATGATAAATGTGCTTAAACACTGTAAGGTGTGTTTGGAGGACCCACAATAAGGACACTTAAAATATGTAATGCTtgtgttttttactttatgtaattaaaaattttattctctattttttaa
>XM_022670415.1
TTGTCTCTTGACAtactttttacatatttttgtattttgtcattaattaaaaaaagctaaGTTCTTTCCTCAGAAGGTCTTTGGTATGGCTTACTAGGAACCGCATCGCAGGAACAACACGGACCTGTTAAAATGTAACACCACAACACTGCAGCAAGCGGCAttgatggAGAGCAGCGGTGAGTGGCAGTGTGTGCGGCGGGGTAAAAGAGCAGCACGGAGAGGAAAAGCTGATCAGTCCCGAAacccaacagcagcagctcctgAACCCGCAGACAGAGAGCGAGACACCCGCAGAATAACTGAAGCAGTTAATGAGCTGAGATGTGAAGATTTCTGGCTGGAATGGCGAGATCTCCTTTCAGGCTGTCTCGTGGGGTCTGGCTGCAGTAGCAGTAAGGAGAACACAGTGGGTGAATGgcagctggagtgtgtgtgttatggccTGGGCAACTTCTCCTCCTGCGTGTCGGCCAGGTATCAGCTCGCCATGCTGCTACTGCTGTTTGAGGCTTTGCAGATTCCTGTGGGCCAGTGCAGCATGTATGACCCGGTGTTCACTGTGACAGAGTGCGAGATCCTCAAAGAGCTGGGCTTCACTGTGCTGACTGAAAACGAGGAAGGGAAACGAGCAGTGTGTCATCCCACCTTCTTCTACTTAATGCACTGCGGAAAAGCTCTGTACAACAACCTGCTATGGAGCAACTGGAGTCCACAAGTCCTGCCAAACGTCATCGTTATTGGCAACAGTTTTCTTGGCATTCAGGAGAGgATGCTTCAGCGGGAGTTTGAAAGAGATTACAACTTTCTCTCACACATTGTAAACGTGTGTGAGGAAACAAGCCTGCCCTGTTCACAACGCTTCATGGATGTGTTTAATGACAGTGCACTCATCCAGTTCCCAGCAGAcaaacttcagaaacttccagaaTCCATCTGGACTGATCTTACAGAACCCCAGTACCAGCACTGTCATGATCTGGAGATCATCCAGAGAGGCAGTAGGCATTTACAGGATGATAAATGTGCTTAAACACTGTAAGGTGTGTTTGGAGGACCCACAATAAGGACACTTAAAATATGTAATGCTtgtgttttttactttatgtaattaaaaattttattctctattttttaa

Function

NR:

description
SRR1-like protein isoform X1

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process

KEGG:

id description
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03440 Homologous recombination

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247187.3 True 1237 mRNA 0.47 7 27207308 27211031
XM_022670415.1 False 1138 mRNA 0.47 8 27207308 27211033

Neighbor

gene id symbol gene type direction distance location
cldn5 cldn5 coding downstream 133290 27071878 ~ 27074018 (-)
ufd1 ufd1l coding downstream 158246 27041506 ~ 27049062 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 172334 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 178814 27024622 ~ 27028494 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding downstream 184040 27019132 ~ 27023268 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding upstream 11807 27222840 ~ 27236161 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding upstream 29957 27240990 ~ 27259800 (-)
LOC103030651 cit coding upstream 296670 27507703 ~ 27588964 (-)
LOC103030338 LOC108413054 coding upstream 393838 27604871 ~ 27659305 (-)
epgn NA coding upstream 520706 27731739 ~ 27755834 (-)
G54716 NA non-coding downstream 146857 27058737 ~ 27060451 (-)
G54702 NA non-coding downstream 233216 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 234315 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 396640 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 458029 26749076 ~ 26749279 (-)
G54869 NA non-coding upstream 32047 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 200201 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 451293 27662326 ~ 27663868 (-)
G54916 NA non-coding upstream 501439 27712472 ~ 27714921 (-)
G54920 NA non-coding upstream 508620 27719653 ~ 27720578 (-)
G54854 dhx37 other downstream 38798 27166686 ~ 27168510 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 427594 26761132 ~ 26779714 (-)
ccl28 NA other downstream 630883 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 637369 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1645169 25549350 ~ 25562139 (-)
G54873 NA other upstream 258185 27469218 ~ 27473347 (-)
G54947 NA other upstream 517678 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 815706 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 942388 28153421 ~ 28157449 (-)
LOC111192657 NA other upstream 1206700 28417733 ~ 28423955 (-)

Expression


Co-expression Network