ufd1 (ufd1l)


Basic Information

Item Value
gene id ufd1
gene name ufd1l
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27041506 ~ 27049062 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247198.3
GGGAGGCGTCACATCCTGTATACTCAGCGTTTCCCTGGGAAGAGGATAGTAGTGTGTTTTTGTACAGTAGCGTCAGTCTGATTTCTGCAGTATTTCTGAGAGAAGTAAAGCGTATTCAGACAACATGTTTTCCTTCAACATGTTTGATCACCCGATGCCTCGGGCCTTCCAGAACCGCTTCTCCACACAGTACCGCTGCTACTCGGTGTCGATGCTGGCGGGACCCAATGACCGCTCAGACGtggaaaaaggaggaaaaaTTATAATGCCCCCATCAGCACTGGACCAGCTTAGCAGACTTAACATCACATACCCCATGCTGTTCAAACTCACCAATAAGAACTCAGACAGAATGACCCATTGTGGTGTCCTGGAGTTTGTTGCTGATGAAGGGATCTGCTACCTTCCCCACTGgATGATGCAGAACCTGTTATTGGAAGAAGGAGGTTTGGTCCAGGTTGAGAGTGTCAATCTCATGGTGGCAACTTACTCCAAATTTCAGCCTCAGAGTCCAGACTTCTTGGACATCACAAACCCTAAAGCTGTatTAGAAAATGCTTTGAGGAACTTCGCCTGCTTGACTACAGGTGATGTCATTGCAATCAACTACAATGAAAAGATCTACGAGCTGCGAGTAATGGAGACCAAACCAGACAAAGCTGTGTCCATTATTGAATGTGATATGAACGTGGACTTTGATGCTCCACTTGGTTACAAAGAGCCAGAGAGACCCACACAGCATCATGAGGAACCTGCCGAGGAAGAGACAGACCCGAGCAGTTATGAGATGGACCTTGGCTTCAGAGCATTCACAGGCTCTGGGAATCGGCTTGatggaaaaaagaaaggaattgaaCCCAGTCCTGCCCGCATTGACCCAAATGACATTAAAAGAGGCATTCCAAACTATGAGTTCAAGATTGGAAAGATCACCTTCATCAGAAACTCCAGACCACAGCCTCGCAGAATAGAAGAgGACGACTCTGTCAATAACTTCATCGCATTCTCGGGAGAAGGCCAGTCCTTGCGGAAGAAGGGCAGGAAACCTTGAGCAGACACACTTCACCAGgaatcaacaataaaagcatCCTACAAACTGCTGTTCCTGTATTCTCCCTTTTTAGAACACAAGGTCAATGATGGTCTGTGCACTAGGATCAGGATCATTATGCTGTTTTACAGATGTAAACGCAAGCATCAGAGATTctgcttttaatttatatatacacagtttAAGTAATTTTAGTAATAAATTGAGGAATAAATGCAGACCAATGattcacattttatatattttttcttttttaactctttttgcGCAGATGACAGGATGGATTTAATATTTGTCCAAAAATTAACTTTAGTTAACTTTAAAGCTTACCTTTAGTGGTGTTTTTTCacaaataattaatgtaaataagaGTTCTTGTTTAGTAATGTTTCTGTTCGAGCTTATTGGTGGTTTTACTTCCTTTTGAAGCTTCTCctgcttattaaaacaaaaccCATGACTTGATGTTTACtaaacagtttgaaaaagtGTAAACTTTAACAAATCCAGTTTTACTATTGCAA

Function

symbol description
ufd1l Predicted to enable polyubiquitin modification-dependent protein binding activity. Acts upstream of or within cellular response to xenobiotic stimulus. Predicted to be part of VCP-NPL4-UFD1 AAA ATPase complex. Human ortholog(s) of this gene implicated in DiGeorge syndrome and schizophrenia. Orthologous to human UFD1 (ubiquitin recognition factor in ER associated degradation 1).

NR:

description
LOW QUALITY PROTEIN: ubiquitin recognition factor in ER-associated degradation protein 1

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0071466 cellular response to xenobiotic stimulus biological_process

KEGG:

id description
K14016 UFD1; ubiquitin fusion degradation protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247198.3 True 1575 mRNA 0.42 13 27041506 27049062

Neighbor

gene id symbol gene type direction distance location
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding downstream 6532 27029916 ~ 27034974 (-)
LOC103022143 NA coding downstream 13012 27024622 ~ 27028494 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding downstream 18238 27019132 ~ 27023268 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding downstream 121088 26884643 ~ 26920418 (-)
LOC103043649 LOC103043649,LOC108430332 coding downstream 387920 26648539 ~ 26653586 (-)
cldn5 cldn5 coding upstream 22816 27071878 ~ 27074018 (-)
srrd NA coding upstream 158246 27207308 ~ 27211033 (-)
LOC103044306 pptc7a,LOC103044306,LOC108430358,LOC107552188,LOC107553043,LOC107699657,LOC107671007,LOC105891618 coding upstream 173778 27222840 ~ 27236161 (-)
LOC103044021 LOC103044021,LOC108430310,LOC103358995,LOC101071916,LOC104927948,LOC103366907 coding upstream 191928 27240990 ~ 27259800 (-)
LOC103030651 cit coding upstream 458641 27507703 ~ 27588964 (-)
G54702 NA non-coding downstream 67414 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 68513 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 230838 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 292227 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 306676 26726651 ~ 26734830 (-)
G54716 NA non-coding upstream 9675 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 98353 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 194018 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 362172 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 613264 27662326 ~ 27663868 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 261792 26761132 ~ 26779714 (-)
ccl28 NA other downstream 465081 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 471567 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1479367 25549350 ~ 25562139 (-)
jcad NA other downstream 2043386 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 117624 27166686 ~ 27168510 (-)
G54873 NA other upstream 420156 27469218 ~ 27473347 (-)
G54947 NA other upstream 679649 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 977677 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1104359 28153421 ~ 28157449 (-)

Expression


Co-expression Network