LOC103022658 (es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040)


Basic Information

Item Value
gene id LOC103022658
gene name es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 27019132 ~ 27023268 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247203.3
tCTAAAGTTTCTTGTGTGTTAGCAGAGCCCTGAAATTGCTGTCAACATCCTTGTCACCATCAGTGAGGCTGCAGTCTTTTTGTCACCATTCCCTCAAAGCCCAACAGCTTGTCTCAGTTAAAGCGCCTATAGGATTGTCCATAGGATAAGTGTGATGTCCAGCGTGCCGGACAGTTCAGACAGTCATGTCCAGTTCAGAGGTAAAACAGTTCATGGTCAGACTGTTATCTCAATGCTTGTGGTGTGGGTGCCGGTGGCCAAATGACTTAAGGTAATAAGATAATGGAAGCAGGTATTATTAGAGGTGatgaagaaaggaaaaaggTTTGCTCCCACAAAGAATCTTATCTTCTCAGAATTTAAGCTTAGGAAGTGACGTCTCTGCAGCTGCAGCGTTGGTATAAAAGACTCCCACTTGGTGCAGAGTGGAAGAGGGTTACGTCTGTCTGCAGGACTTTGTTGGGTTGACCATCCCACCGCTTTTTGGATTGACCTGTGTGCTCTGAGTCAGAGAACTTGACCATGTTGGCATCAAGAGCTCTCCTCTTAAAGCAAGCTGCAGCTGTGCTGAGCCGCCAGCCCGCTTGCCTGGTGCACCAGGGGGACTGGGGAAACTGGGGGAACACCAACATTGCTGTGGTGTTCTCTGGATGTGGCTGGTGGGATGGAACTGATGTTCATGAGGCTGCGTAcaCTATGTATCACCTGAGCCGTAATGGGGCACGCTTTCAGATCTTCGCTCCCAACCAGCAGCAGATGCATGTCATGGACCACATGAAGATGCAGCCCTCCTCTGGCGAGAACAGGAACATGATGATGGAGTCTGCCCGCTTCAGCCACGGTCAGGGCATGATGCAGATGCAGGACCTTTCCAGGCTGGATGTCAACAGCTTTGATGCAGTCATCTTCCCTGGAGGCCACGGCATCGTCAAAAACCTGTCCAGCTTTAACAAGGATGGGAAAGACTGCAAGCTTCACAACGATGTGGAGAGGATTCTGAAGGAATTCCACCGTTCACGCAAACCAATTGGtttgtccagCATGTCTCCTCTGCTGGCATGCCGGGTGCTGCCAAATCTGGAGATCACCATGGGTTACGAGCGGGATGAGAGCAGTCGCTGGGGACGCTGGCCCAACACCAACATGGTGCAGGCTGTCAAGAGCATGGGTGCTCGCCACAACATCCGCGAGCCCTACGAGGCCTATGTGGACGAGAAAAACAAGGTGATCAGCACCCCAAGCTTCATGTGGGAGACAGACTACCATTATCACTACATCTTTGACGGCATTGGAAACATGGTGAAGCATGTCATGCGCATGACCTCAAAGTGAGTTCTGCAAGAAACGCAGTTGGaaggttttaataaaaaaagctgaaaCTTTAGGTTGACCTGAACCTGCTACACTGCAGGCATACagagagtaaataaaataagcatCCAATGCAGGCTGTCTGTGTTGTacta

Function

symbol description
es1 Acts upstream of or within mitochondrion morphogenesis. Located in mitochondrion. Is expressed in eye and retinal cone cell. Orthologous to human GATD3 (glutamine amidotransferase class 1 domain containing 3).

NR:

description
PREDICTED: ES1 protein, mitochondrial

GO:

id name namespace
GO:0005739 mitochondrion cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247203.3 True 1466 mRNA 0.50 7 27019132 27023268

Neighbor

gene id symbol gene type direction distance location
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding downstream 98714 26884643 ~ 26920418 (-)
LOC103043649 LOC103043649,LOC108430332 coding downstream 365546 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 375764 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 391269 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 404583 26601463 ~ 26614549 (-)
LOC103022143 NA coding upstream 1354 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 6648 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 18238 27041506 ~ 27049062 (-)
cldn5 cldn5 coding upstream 48610 27071878 ~ 27074018 (-)
srrd NA coding upstream 184040 27207308 ~ 27211033 (-)
G54702 NA non-coding downstream 45040 26973568 ~ 26974092 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding downstream 46139 26962935 ~ 26972993 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 208464 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 269853 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 284302 26726651 ~ 26734830 (-)
G54716 NA non-coding upstream 35469 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 124147 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 219812 27243080 ~ 27245098 (-)
LOC111192649 NA non-coding upstream 387966 27411234 ~ 27412937 (-)
LOC111192650 NA non-coding upstream 639058 27662326 ~ 27663868 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 239418 26761132 ~ 26779714 (-)
ccl28 NA other downstream 442707 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 449193 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1456993 25549350 ~ 25562139 (-)
jcad NA other downstream 2021012 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 143418 27166686 ~ 27168510 (-)
G54873 NA other upstream 445950 27469218 ~ 27473347 (-)
G54947 NA other upstream 705443 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1003471 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1130153 28153421 ~ 28157449 (-)

Expression


Co-expression Network