LOC103024013 (adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890)


Basic Information

Item Value
gene id LOC103024013
gene name adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26884643 ~ 26920418 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007247208.3
GAAAAGTCCAGCTTTTCTTCTTGGTGCCTGTTGGAGATGGTGGTGGTGCAGCATGCCCATCCCTGGGCCACCTGCTGGGCTGTGGTTCTGTGCGTAAAAGAGGAGGGGAGTCTGACAGTGAGTCAGTGTGGTGTCACCGTGCAGGAGGAGCTGCTTTTCCCAGACATCAGCACTATAACAGTCCCAGCAGAGCGCACCACACCACTACACTACAATCTGCATCTGCACGAGCGCACAGCGTTCGCTTCACGAGCACCAACTAACAGAAGAACACGGCAACACGGATTCAGTACTTCAGAGCTTTTGGACTACAGGACGCAGAGACGCACGCATAAGGGAGAATCAACTGACTGGCATCATCTCTATTACCATGCACCTTAAGAGCCTCTTGCTGGAGCCGTGTCCAACTCTATGAGACTGAAAGTGACCTGTTCTTCGGCCAAAAATAACGGTCTCAGCTCCTGCCAAAATGCTTTTAGTTCCGGTTTTATTATTCAACAATAAGCATGTTATCTCTTTTCCGCCTGTAGCCTGACAGGATTGCACAGTGGGCGGAATTCAAAAGCAGCTCCGCGCTGTAGATTTGGACCATGACTTGGACGATTTGCATCACTACATGTCAAGAAAATGTTCCTTCAATCATGCGTACGGCTTCACATTTGAGGACAGACGAGAAGTCATTAACACGGcaataaaaaagcaaacaacTCCTTGTGGAATTTCACAAGAGGGAGCGGCGCAGACCATTACAAGTGGCGTCTCTGAGTACCCTCGTATCAGCGAACAGTTCTAGAAATTGATGGATCTTTAGGCTTGACAAGATGATATTTCGCGAAAAACATTCTAGAGGACATTGACATGCAATTGGATTACAAGAGCATTCTCCCTTCAAGTTCAAAAGTGAACTCGAAACATGCAATTTCTCTTCACCTCATGTTGTCCTACTGCGTCCATTCGTGAAGAATGTCAAAACACTTGAGACAAATTTATGGCTTAGCCCTGCAGTTTTATTGCACAGTTGAAAGTGTGTACCCGTACAGCGTACAGGATGTTTAGTTCCTTTTGTGAATTTCCTTGAACACATTTGCTTGTTCTGAGGGCAGATAgttaaaaactcatcattttgaggTTCCGTCCTTCATTGTGAAGAATCACACCAGGCTTCATCAACTTCATCACATTCCTAATAGCTGTCAGATGGAGAATGAAATGTAAATGCACTGATGCCCTCGCAGAGGGTAGCTATCTGAgcaactgacatttaaaacctcCCTCTTTTGCGGACCATTGAAAGGAATCTTGTGAGCAGAGAAGTGTGAGTGAAGTGTGTTCATCCATCAGACCATCACCAAATGCCCGAACATCGTGAACAGATGGTTCTTCTTGGAGAGAACATGACCCCAGGGATTTCTGCCCAAAACTGCACCAACTGCAGCCAAGTCCTCGTGCCAGAGTTGAACGTCACGAAAGCTGTTGTTTTGGGCATCGTCCTGGCCATCTTCATCGTGTTTGGGGTAATGGGAAACATCCTGGTCATTCTGTCTGTAGCTTGTCACCGCAATCTGAGAACTGTCACACATTATTTCATCGCAAACCTGGCAGTGGCTGACCTTCTCTTGAGCTCCACCGTGCTTCCTTTCTCTGCTATCTTTGAAATGTTGGGCCACTGGGTCTTTGGCAGGGCCTTTTGCGATGTTTGGGCAGCCATGGACGTCCTGTGCTGCACAGCATCCATTATGAGCTTGTGTGCGATTTCTGTAGACCGTTACATTGGGGTCAGTTATCCTCTACGCTATCCAACTATTGTGACAGAACGCAGAGCATTGCTGGCACTAATGGGAGTTTGGGCTCTGTCCATCACTATTTCAGTCGGGCCACTCTTTGGCTGGAAGGAGCCGGCGCCTGAGGATGAGACTGTCTGCAAAATCACAGAGGAGCCTGGTTATGCCATCTTCTCAGCGGTGGGCTCCTTCTATCTTCCCCTGGTGGTGATCCTGGTTATGTATTGCCGCGTGTACGTCGTGGCCCGCAGGGAGACACGAGGCCTCAGAAAGGGGCAGAAGACTGAAAAGTCTGATCATGCGGAAGCGGTGACCTTACGGATACACCGTGGTAACACTTCAGCTTCAGAGGACGAGGCTTTGAGGAGCCGAACTCACTTTGCCCTCCGACTGCTCAAGTTCTCAAGAGAGAAAAAGGCTGCCAAGACTCTGGGCATCGTGGTTGGGTGTTTTGTCCTCTGCTGGCTACCGTTCTTTCTGGTGTTGCCCATTGGCTCCATCTTCCCAGCCTACAGACCCTCAGACACAGTCTTCAAGATCACCTTCTGGCTTGGCTACTTCAACAGCTGCATCAACCCCATCATCTACCCCTGCTCCAGCCAGGAGTTCAAGAAAGCCTTCCTGAGCGTGCTGGGCGTGCACTGCCTGCGCCGCACCCCCACGCCCACCCACCACCTCTACCAAGGCCACGCTGCCGGCCACGGCCAGTCGCAGCTCCTCTCCTTGAACCTGGAGAGCCGCCCCTACCCGTCCCGCCTCAGTCACTCCTCCTCCATGGCCCTGTCCCGCACACCCTCGTCCCGGGACGGCCGGGAGTGGCAGGCACCGTCCCGGGCCTCCTCAGTGGGGGTGAATGCCGGGGCTAAAGTGGCTGGCGTGTGCAGTAAAAACCTGTTGAGGACGTGCTGCTGCATAGGAGCGGAACAGACTCAGACTCAGCCTCCCGGCGGCTCTCTCCCCATCATTAAGATCCATCagctctctctgtgtgagaACGGGGACGCAGTGTAGGCTGTGGAGTGTGAAGTACCTTCTGTCCCACCATAAATATTCAATGAATACATGCACagaatattttcaaaaatacgATAGCTGATCTTAAGTGTATCCTTTAATGCTCAGCATAATATACATTTGGATTATTATGTGATTTTAGGTtataataacaattataatattcaaaattctgtatttaatacagagtGAATTATGAGTATGTGAAgtatattatgttaaataattaagatATCTCCTTTTCTATTAATTAACACATACATGGTATTAACTGAACGTTTACAATAAGCTATGCCAACTCATGTTTATATaagttttaaatgcttttttccatcactggtgATAAATGTGACTTTTTAGAGTTGTTTTTCACAGTATGTGCCTATTTACCTGTttaaagaaagaggaaaatCAGTAAGTCACAtgataacaaagaaacaacctTAATAACAGcactataattatta

Function

symbol description
adra1aa Predicted to enable adrenergic receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Alzheimer's disease and hypertension. Orthologous to human ADRA1A (adrenoceptor alpha 1A).

NR:

description
PREDICTED: alpha-1A adrenergic receptor-like

GO: NA

KEGG:

id description
K04135 ADRA1A; adrenergic receptor alpha-1A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007247208.3 True 3262 mRNA 0.48 3 26884643 26920418

Neighbor

gene id symbol gene type direction distance location
LOC103043649 LOC103043649,LOC108430332 coding downstream 231057 26648539 ~ 26653586 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding downstream 241275 26640501 ~ 26643368 (-)
LOC111192646 NA coding downstream 256780 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 270094 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 285321 26594340 ~ 26599322 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 98714 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 104204 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 109498 27029916 ~ 27034974 (-)
ufd1 ufd1l coding upstream 121088 27041506 ~ 27049062 (-)
cldn5 cldn5 coding upstream 151460 27071878 ~ 27074018 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding downstream 73975 26804601 ~ 26810668 (-)
G54651 NA non-coding downstream 135364 26749076 ~ 26749279 (-)
LOC111192648 NA non-coding downstream 149813 26726651 ~ 26734830 (-)
G54623 NA non-coding downstream 182761 26700596 ~ 26701882 (-)
G54613 mrps27 non-coding downstream 208020 26671908 ~ 26676623 (-)
G54699 tmem230,ct030,LOC103023473,LOC106579885,LOC107713020,LOC101077900,LOC105894893,LOC107553029 non-coding upstream 42517 26962935 ~ 26972993 (-)
G54702 NA non-coding upstream 53150 26973568 ~ 26974092 (-)
G54716 NA non-coding upstream 138319 27058737 ~ 27060451 (-)
G54846 NA non-coding upstream 226997 27147415 ~ 27505872 (-)
G54869 NA non-coding upstream 322662 27243080 ~ 27245098 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other downstream 104929 26761132 ~ 26779714 (-)
ccl28 NA other downstream 308218 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 314704 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1322504 25549350 ~ 25562139 (-)
jcad NA other downstream 1886523 24950612 ~ 24998120 (-)
G54854 dhx37 other upstream 246268 27166686 ~ 27168510 (-)
G54873 NA other upstream 548800 27469218 ~ 27473347 (-)
G54947 NA other upstream 808293 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1106321 28026739 ~ 28043251 (-)
G55023 cunh5orf51,clg13h5orf51,LOC103038767,LOC107667559,LOC107686395,LOC106585203 other upstream 1233003 28153421 ~ 28157449 (-)

Expression


Co-expression Network