LOC103047279


Basic Information

Item Value
gene id LOC103047279
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21830839 ~ 21870274 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250120.3
GATACTTGGTTGGTAGAGTTTGGGGACGGGACCTGGGCGTGTTGAGAGCTGAGGGAGATTCAGGGGGATAGCTAACAGTTACAGtttttaagctaattaaaagtagtttaagtaaaattagtTAATTCCCTGGCTGTATGCGCTGGTAATAAGCTGTAAGGTGTGGATTAAGttgtgtattttggtgtgtaAATCTGTGTGGGTTCAGTAgtcttgctgctgctgctggaagtGAGGCGGGATGTCCGGAGAGCTCAGGCCCAGGCAGTGTGTGTTGGAAAAGGGCAGCGATGGATACGGTTTCCACCTGCACGGAGAGAAGGGCAAGCCGGGTCAGTACATACGGCTGGTGGAGGCCGACTCTCCGGCCGAGGTCTCGGGTCTCCTGGCCGGGGACAGGCTGGTGTTCGTGGACGGGGAGAGCGTGGAGGGAGAGAGCCACCAACAGGTGGTGTCCCGCATACGAGCGGTGACCGGTAAGCTGGAGCTGATCGTGGTGGACTCCGCGACCCAGGACCTGCTCACTAAACTCAGCCTCAAGTGCCAGAAGGAGTTCGTCACCGACGGGATTCCCTCCGCCGCGGCTGCCGCCGCCGAGCCGGAGCCCCGCAGGGAGCTGGAGAACGGCACGCCGAGAGAGGAGAGCCCACAGCCCGGCGCTAACGGAGACTCCTCCGCCGCTGCTGCCGCCTTCGACAGGCTGAGCGTCAGCTCTAAGGAATCGAAGAACGAGCTTCGCCCCCGCCTCTGCCACATGAAGAAAGGAGCCACAGGCTATGGCTTCAACCTCCACAGTGATAAGTCCAAACCTGGCCAGTATATCAGGGCAGTGGACGAGGACTCCCCGGCCGAGAAAGCTGGACTTCGACCTCAAGATAAAGTAGTGCAGGTGAATGGCGTGTCTGTGCATGGCATGCAGCACTCTGATGTGGTGGGAGCCATTAAGACAGGAGGAGATGAGCTTCGGCTGCTGGTGGTCGACCCAGACACAGAAGCATACTTCAACAGCTGCCAGGTTCTCCCCACTGAGGAGCACCTCACAGGCCCTCTACCTGAACCTGCAGCCAGCAAGGAGATTGCAGAAGAAAAGgtgaaggaggaggagcCAGCTCAGGAAGCCAAACCCAAAATATCAGCCAGTCCCTCTACATCCAGCACTTCCTCCACTGCATCCATccctgctgctactgctgctgctactgctgccaGCAGTCCACCCCCAGAGGAGAAGCTGATGGAGAGGAGTGTGGGCGGGGATGCAGGAGCGAATCTGGATCTGGGTTTGTCGCTGCAGCAGGCCAAGGAGCGCGCTCACCAGAAACGCTCCAACAAGAAAGCGCCGGCTATGGACTGGAGCAAGAGGAGCGAGCTGTTCAGTAATCTCTAAAAATCACAGCCCTTAAAgccctgtttctctctccaattatcattcattattttatttttatcctttatttcatttatttataaagttcaCAATCCTCCCTGTCAAGCTCATGAACCAAGTTCCTCAGATTCTGTGatcagctgtgttttttttaaagggctactgaaaaaataaaagaggtaGAAAAAGGGAAATACTGAAATTCTGCTCCTGCTCTCACTGTAAAAGGAGATGAAATCACTGTCTTGTTATGGTGAcaggatatttttgttttgtttctttgttctttctTCCAtctcttccttccttcttttgttttttttgtttgttttagccatctctctctgtgtcacacacactcagaactcGTATGAACATTTCAAGCCAGTGTTATTTTGCTTTGATGATTTTATATGGAGAACTATATcagtgtgttggagtgtgtgttcaTACACGTATTTTCTTAGTTCACAACTTTTCACATATCAATCATCTTAAttaattcttcttttttctttagatGTAATGTTACCATATTATGTACAGTATAGAGTTTAATACTATtaaataaatgggaaatgcGTCATAAACCATATTAGTTTCCTGAATTTTGTTCATAAAGGCATGTAAATGCCCCTGTGGGATATTTGAGTGATGCAGCAAACTGTAcagtctacctgtctgtctgtctgtctgcttttGAACATTTATTTTGATGGTTGAATATATAACTGTAGCTTTCAGAACAACTGTAATTGTGTAGAATTAGCATTTTCGGGGGCTAATGCTTTCTTATAATGATGTCtgatgaaaagaaaaatagttaaaataagaGCAGATATTCttaatacaattataaataaaggctactttctctttttaaagATCTGTAAAGCTGAGCCACTGTTTTTTAGATTTGCTATTTTTTCTATATCGGGGAAATCCTAAATCTCTAACATGGACCGTGCTGTCAGCTTGTTTGTAAAACATtcctttataaaaaatatgtttagaagtctgtcttttttttttatagaattttaTAATTAgatttgtttatgtacattagTCCTGATCTGAAAATCAAACCACTGTTATACAGTCACCCaaagtttatttaatattttaaatatttgctcGTAAAACTCGCAATTATTTagctttgatttatttgtacTTTGAAGCACAATGCTGTTGTTTCCTTCAGATTTGTCACGTTTGCAATTTgttgttgatttaaaaaaaaaaatcatgtttagctgttgactgcagaattatttttcttttttttttttaaagaacattcCTGAACAAATGACCACTGTTGTATCACTGTACACGTCTCCTTAGCTCTGTGATAGTTTAGCTGTTATTAATGATGAATATATAAAGATGAATAAATCAATTTTGGCGTA

Function

GO:

id name namespace
GO:0006612 protein targeting to membrane biological_process
GO:0043113 receptor clustering biological_process
GO:0055078 sodium ion homeostasis biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250120.3 True 2802 mRNA 0.44 6 21830839 21870274

Neighbor

gene id symbol gene type direction distance location
LOC103044518 LOC108430683 coding downstream 160891 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 445954 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1250235 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1262644 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 1274509 20541864 ~ 20556330 (-)
narf narf,LOC107581643 coding upstream 3215 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 49255 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 62995 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 176222 22046496 ~ 22054088 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 186699 22056973 ~ 22065003 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 22383 21798459 ~ 21808456 (-)
G53850 tdrkh non-coding downstream 32402 21792568 ~ 21798437 (-)
G53838 NA non-coding downstream 86806 21739449 ~ 21744033 (-)
G53757 NA non-coding downstream 177144 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 189311 21640367 ~ 21641528 (-)
G53858 NA non-coding upstream 16280 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 23152 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 37411 21907685 ~ 21916759 (-)
G53868 ascc1 non-coding upstream 70328 21940602 ~ 21941350 (-)
G53918 NA non-coding upstream 286715 22156989 ~ 22158000 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1011430 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1043221 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1140417 20621569 ~ 20690422 (-)
G53382 NA other downstream 1980489 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2260461 19522702 ~ 19570378 (-)
G53996 NA other upstream 1221032 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2471126 24341400 ~ 24351936 (-)
svil NA other upstream 2915977 24786251 ~ 24920590 (-)
jcad NA other upstream 3080338 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3679076 25549350 ~ 25562139 (-)

Expression


Co-expression Network