narf (narf,LOC107581643)


Basic Information

Item Value
gene id narf
gene name narf,LOC107581643
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21873489 ~ 21885441 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250121.3
CATGCGCCGCAGTTCAGCTGAAGGACAATGAAGGCGGCTGGCGCTGTGTTGAGTAATCGGGGAGTTCGTGTTCAGCGTTTCTTCAGTGTTTTTGAGCTAAAAATGGGCTGCGGCGGTGGGGACCGACCTGTTGCTGTGGGCTGTGGGCGATGTGAGCGGATCTGCCCTGTTTTTTGATGACCGTTTGGACTTTAGGAGGAAAAACCGAGTGAAAACCGAAGGCTAGCGAAtccgtgtttactgtgtttcgGTTTCCAGTGGAGAAAGCTGTGTTTCTGCCGGGCTAATAATCGAGCTAAACACTGGACTGGACTTTTAAACCCGGCCAGCAGACTGTCTGCACTTAGTCCTGAGATCCTGACAGCCtgcaaataaaccaaataacctTCATCCTTTACTTCAGGATTATCCCTCATAGGAACTACTTTTATAATGTCTGAAGTAAACATTGCAAGGAAGAAAGAGAAGTGTGAGAATTGCACTAAACAGtgcaaTAAGAAACAGAGTGATGATGCTCTAAGCTCACTGCAGGAGAGTGGCATTGCCAATGGAGAGGTGAGCGGACACACTCCGTCTCAGGCAGTGCTGCTGAGCGCATGCCTGTCGTGTGATGGCTGTGTGTCTGAAGAAGAGAGCCAGAGAATCTCTCAGCAGAGCCTTCAGGGAATCAATCGTGTCCTAGCCCTTAATAAGAAGTGTGATGTGTCCAAGCACAAAATGCTGGTGGTGTCTGTGTGTCCTCAGTCCTTGCCGTTTTTCGCTGTCAAATTTCACCTGGATATCCCAGAAGCTGCTCAAAAACTCTGTGGCTTTCTGAAGAGTGTGGgAGTTAAACATGTGTTTGACACTACACTGGCTGCTAGTTTCAGTATTCTGGAGAGCCAGAAGGAGTTTGTACAGAGATATCGCCGCAGACATCACGACACTCATGCTATGCCAATGTTCACCTCTTCTTGTCCAGGATGGATCCGCTATGCAGAGCATGTGCTTGGAAGTCTAGTCACTCCACACATCTGTACAGCACGATCACCTCAGCAGGTCATGGGCTCTCTCGTGAAAGACTACTTTGCCAGGCAGCAGAAGCTGACCCCAGAGCAGGTGTACCATGTGGTAGTGGCTCCCTGCTTTGATAAGAAGCTGGAAGCGGTGAGGGAGGAGTTCTATAACAGCCTGCTGGACAGCAGAGACGTGGACTGCGTGCTGACCTCAGTGGAAATTCTGCACATGATGGAGCAGAGTAATGTTTCAATGGAGAGCATCAATCCTGTTCCTCTAGATCACGTGTTTGGCGAGATCAATGATCCAAGCTTGATGAGACATGATGGTCGAGGCTCTGAAGGCTTCCTGGAgcatattttcaaacatgcagccAAAGAGCTTTTTGGGCTGGAAGTTGAAGAAATTGTATACAAGACTCTTAGAAACCGAGATTTCCAAGAGGTGGTGCTAGAGCGTGACGGAGAGACTCTGCTCCAGTTTGCTGCAGTCTATGGCTTCCGGAACATTCAGACACTGGTGCATCGCATGCGGAAAGGCAGAGTGCCGTATCAGCTAGTGGAAGTTCTGTCCTGTCCAGGAGGCTGTGTGAGTGGGCGTGGCCAGGCTGAGGGAGAGGGAGGCAAGCCTGACCGTGCCCTGATCCAGCAGATGGAGGAGGCCTACAGTAGTCTGCCCGTCCGACTCCCTGAGGCCAACCCTGAGGTCCAGCGCCTTTACCAGGACTGGCTAGAGGGCCAGGACTCTCCTCACGCCCAGCAGATCCTCCACACCAAATACAGCAAACCCACACAGCCCCCCGCACAAACACTGATCCCTGATATACAGTGGTGAGGAACCGGGGGGCTTTAAAGGGACCATTTATTTCATGTATATCTGAAGAGAGATGCAGCAGAGTTTCATTAGTGACAAAGAAAAGTTTCCaaacaaagactaagactgaggctggagctgtACTGTGATCATTCTGGCCACAGCCAGACGACTGCACAGAGTCCGTCCAAGAGACATATCACATGACCTGAAAGCAACCAATccaaggagtttttttttttttttttaagttatgcaGTTTATGTGCTTGTAAGTCTTCTTTCATTGCTTATATAAAAGATGTCATAAATGGATTATAAACTCATAAGAGGAGCTTAGCAATAACATAGGGCATTGTCTACTTACAAAATATTATGACCattgatttaaattaattacGAGTTTATATCTTGTCTGCACGGACTGTCTGTGTCTATCTGGGCTTTAccctaaaatgacaaaaacaaagaGTGCTAAAGCCTAATTATTGGTgccacaatataataaaaataaccaaTCAGTGACCAAA

Function

symbol description
narf Predicted to enable lamin binding activity. Predicted to be located in nucleus. Predicted to be active in lamin filament. Orthologous to human NARF (nuclear prelamin A recognition factor).

NR:

description
PREDICTED: nuclear prelamin A recognition factor

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250121.3 True 2338 mRNA 0.48 12 21873489 21885441

Neighbor

gene id symbol gene type direction distance location
LOC103047279 NA coding downstream 3215 21830839 ~ 21870274 (-)
LOC103044518 LOC108430683 coding downstream 203541 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 488604 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1292885 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1305294 20562271 ~ 20568195 (-)
ddit4 ddit4 coding upstream 34088 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 47828 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 161055 22046496 ~ 22054088 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 171532 22056973 ~ 22065003 (-)
zeb1 zeb1 coding upstream 2608874 24494315 ~ 24607305 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 65033 21798459 ~ 21808456 (-)
G53850 tdrkh non-coding downstream 75052 21792568 ~ 21798437 (-)
G53838 NA non-coding downstream 129456 21739449 ~ 21744033 (-)
G53757 NA non-coding downstream 219794 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 231961 21640367 ~ 21641528 (-)
G53858 NA non-coding upstream 1113 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 7985 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 22244 21907685 ~ 21916759 (-)
G53868 ascc1 non-coding upstream 55161 21940602 ~ 21941350 (-)
G53918 NA non-coding upstream 271548 22156989 ~ 22158000 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1054080 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1085871 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1183067 20621569 ~ 20690422 (-)
G53382 NA other downstream 2023139 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2303111 19522702 ~ 19570378 (-)
G53996 NA other upstream 1205865 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2455959 24341400 ~ 24351936 (-)
svil NA other upstream 2900810 24786251 ~ 24920590 (-)
jcad NA other upstream 3065171 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3663909 25549350 ~ 25562139 (-)

Expression


Co-expression Network