ddit4 (ddit4)


Basic Information

Item Value
gene id ddit4
gene name ddit4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21919529 ~ 21921617 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250125.3
TTTGTTCAGCTTCATGACATCAGTCTGTAGAGAGAGACGGAGCGGTGGAGGAGAGTGTAGAGGGGGATCAGCGCTTAGAAAACAGCTCCTTTGTTACTTTTACCACTGTGTCTTGCACTTAAATACTAGCTCTTTAATCGTCAGAACTGGACTGGCATCGACTTTGGACTGTTACAGCTCTGATTCGaagtaaagaaaaagaagctAATTCCTGTTGAAGTATCTCCCATCTCACTGGATATAACCATGCATAAAGACAGAAGTTCTGAGGTCTGGACAGAATCTGCTCCCACTGAGGCCTCAGCCAAGCGCCTGTCCTGGAGCTCTCTGGTCCAGAAACTGAGCCACAGCCTGGACTCGGACTCTGAGAGCAACAGCAGCAGAGATGATGTATCTGACTCTGgtTCTGTATCTCTGCCAGACCTGTCCAACCTCGATTCTGAATACTTCTACGACCCAATGGAAGAGAGCCTCTGTAAAGAAGTTGTGCAGCTCATCTCCCGCAGCCTGATTGAAGCAAAAGACTGTACTCTCCACTGCTCCAAGCTGCTTATCCCCGAGAAACTTCTGGAGCACATAGGCCAGGAACTGGTACATCTGGCTGCGAGCGAGCCGTGCGGCCTGCGAGGGGCGCTGATCGACCTGTGTGTGGAGCAGGCTGGCACACTTCAGTCTGCAGGGCAGATAGCTGCAGACCCTTACCTCGTCCCCACCTTTCAGCTCACACTTGTACTCAGACTGGAGTCAGGAGGCATTTGGCCTAAAATCCAGGGCCTGTTTGCACCCAAGTCCTCCTCGTCTCCACCTGTAAGAAATGCCCTTAAACTGAGCACTGGCTTCAGGGTGATTAAGAGAAAACTCTATAGCTCTGAAGAGCTGCTTATTGAAGAatgctgaaaacaaaaaaagactaaCTTGACTCTTTCTGGACCTCCAGCAGCTGTCTTATTCTCAGAGAAGCCTCTCATCACTTTTTGGTGATTCAAGAGCTGTGAGCTGTTGTTGCAGAGGACTGACATGACCTTGCCTTCTGAAGACCGAATGCCTGAGGCAATAAAGCTTgtattttataatgaagtgtacTACAATAGTCAAGAAgttacctaaacacacacacaactgcatATCCTTTGTCACCAGAGTGTTTATACAAAAGAACATATAGGGTACACTGTTTGTCAAATTGA

Function

symbol description
ddit4 Predicted to enable 14-3-3 protein binding activity. Acts upstream of or within dorsal/ventral pattern formation. Predicted to be located in cytoplasm. Is expressed in several structures, including central nervous system; digestive system; mesoderm; muscle; and pleuroperitoneal region. Orthologous to human DDIT4 (DNA damage inducible transcript 4).

NR:

description
PREDICTED: DNA damage-inducible transcript 4 protein

GO:

id name namespace
GO:0006915 apoptotic process biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0009968 negative regulation of signal transduction biological_process
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K08270 DDIT4, REDD1; DNA-damage-inducible transcript 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250125.3 True 1187 mRNA 0.48 3 21919529 21921617

Neighbor

gene id symbol gene type direction distance location
narf narf,LOC107581643 coding downstream 34088 21873489 ~ 21885441 (-)
LOC103047279 NA coding downstream 49255 21830839 ~ 21870274 (-)
LOC103044518 LOC108430683 coding downstream 249581 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 534644 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1338925 20572412 ~ 20580604 (-)
anapc16 anapc16,cj104 coding upstream 11652 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 124879 22046496 ~ 22054088 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 135356 22056973 ~ 22065003 (-)
zeb1 zeb1 coding upstream 2572698 24494315 ~ 24607305 (-)
mtpap NA coding upstream 3149837 25071454 ~ 25099104 (-)
G53856 NA non-coding downstream 2770 21907685 ~ 21916759 (-)
G53861 dnajb12 non-coding downstream 21949 21893426 ~ 21897580 (-)
G53858 NA non-coding downstream 30900 21886554 ~ 21888629 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 111073 21798459 ~ 21808456 (-)
G53850 tdrkh non-coding downstream 121092 21792568 ~ 21798437 (-)
G53868 ascc1 non-coding upstream 18985 21940602 ~ 21941350 (-)
G53918 NA non-coding upstream 235372 22156989 ~ 22158000 (-)
G53924 NA non-coding upstream 276631 22198248 ~ 22298487 (-)
G53926 NA non-coding upstream 395777 22317394 ~ 22449619 (-)
G53932 NA non-coding upstream 620553 22542170 ~ 22542524 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1100120 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1131911 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1229107 20621569 ~ 20690422 (-)
G53382 NA other downstream 2069179 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2349151 19522702 ~ 19570378 (-)
G53996 NA other upstream 1169689 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2419783 24341400 ~ 24351936 (-)
svil NA other upstream 2864634 24786251 ~ 24920590 (-)
jcad NA other upstream 3028995 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3627733 25549350 ~ 25562139 (-)

Expression


Co-expression Network