LOC103023380 (sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473)


Basic Information

Item Value
gene id LOC103023380
gene name sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22046496 ~ 22054088 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007250129.3
tgctgctctctgtATGGTTGCCACGGACGCCGTCTCCTCTCAGCGGCGCCGTTAGCTAACGAGCAGTAGGCTAACGGGTTAACGGGTTATTCCTACACTATATAAGCTAATTTTAGCTATTATAGCTCAGCTGAGGACACCGGGACTCTCGGAGAAGCGGTTACTGTGATTAATAAGAGGAGACACCACCCGCAATGTCATTTATATTTGACTGGATCTACCGAGGCTTTAGTGGTGTACTACAGTTCCTTGGTCTGTATAAGAAAACAGGGAAGCTGGTGTTCCTAGGGTTGGATAATGCTGGGAAGACGACACTGCTGCACATGCTGAAGGATGACCGGCTGGGACAGCATGTGCCTACACTACATCCTACCTCAGAAGAGCTGACCATTGCTGGAATGACCTTCACAACATTTGATCTCGGTGGTCACGTACAAGCCAGGAGAGTGTGGAAGAATTATCTCCCAGCTGTGAATGGCGTGGTATTTCTTGTCGACTGTGCAGATCACGAGCGGCTCGCTGAGTCAAAGGTTGAGCTTGATGCACTGCTGTCAGATGAGACTATATCTAACGTGCCGATCTTGGTGTTGGGGAATAAAATCGATCGTCCAGAGGCAGTGAGTGAAGTGAGGCTACGAGAAGTCTTCGCTCTTGATGGACAGACCACTGGGAAGGGAAGCGTGTCACTGAAGGAGCTAAATGTACGTCCGTTAGAAGTCTTCATGTGCAGTGTTCTGAAGAAACAGGGCTATGGAGAAGGCTTCCGCTGGCTCTCTCAGTACATCGACTGAGTGGAGAGTCATGGACAAGATTCCTACTTCTGACTTCTGATAAGCATTTTGATAATGGGGCCCAGGAAGAGAACTGGGTATTGGTATAAAGACACTAATCCACCCTCAGAGTCCAACACTCTCAACATTCATCCTGGAATGTAAAATGCATATATGATTTTAAGTTATGTTGTCTAAAAACCTCAGACCTATAAAGGtatttaacattgttgtttggGCCAGTCAGCTATTCATGTCAAGTCACACATATGTACACTATTTCTGCTGTCTGTTTCTGAATATGTGTGCTTATATGTGACATATTTTATTGTAGTGTAATATCTATTTGGTATAATACAGCACTTTGAGTTTAGGCTGGAGCACGGCTTTTGCTGAAGTAGTAGGAAGTACTGCCAACATGAAGTCATATCGATAGAACCCAAAATGCAAAGACATACGTTTTAAAAGGCTTGGATTTTccctaaaaacatttataaatgaatGGAAGTCGCTTCCTGTGACTGGAGTGTTCACTCCCAGTCCTGGGTGAGGCTGTGCTTCAGCATATTTTGGCAATTTCCCTCCTTAAATCCATGTGTTAATTGCAGTGATAATATTGGAATAGCAGTATTAATGAGTATCTGGATCAGGCCAGTATCAGAATGGGAAAGGAGGGTAGAATAAATTTGATCCGATCCTGTTAGACATCTATACTAAAATAGCACACACTCAGACTTTGTGCTGAGTGTTTGAAAAGCTTTTAGAAAACATTGGGTCATACAATGAGGGCAATTTAGGGCACTGTAAtagtagaaaaaataaagccataatATTAAGTCATGCAATATGGCATTCCAGGAATTAAATCATAATACTTGGAGAATAAAGACATAATACTTAAGGAATAAGTTGTAATGTTTTGATATTTGAGTTGCTACTACCAGGAAAGTCGCATTATTATGACCAAAACGTTGCAAAAATTAGATATTAACAGTCTCCTGTTAAAATGAGGCAGGCTGATGATTTTGGTTGttatatactataataatatCTTGGTCTCTTAGTATAAGAACATTGGCATGTCTGTGCAGATCTTTATTTAGACAAAAGAAGCAGATGGACATGGAGGAAGAGTATTTTTGGTAAAGTTGCCCATTTCTACAGAGCTATCAGTGGGAACATCTCAATGCTAGTCTAAGAGGGCATGTAATTAAACCCTTTGACCATAATATTGTGACTTTTCTTGGTAGTTGTACCACATGGTGGTATTAATGGTGGAATTTTATgactttattttctaaataattatgactttattctcgaaAATATTAGTGTTATTCTTAATGtctacttattttacttttaaatccCGTCATAGGGCCAGGATTACCCCAAACtctacatttttaatatcagtATTGTAAACCAAAAACTAGTATTGTTCAAGCCTTCAGGACCGGGAGTAAATACCCAGGATCTATTATCTGCAGGTTTGCATACACCCTATTAGATTACatccctgctgaaaaatccagctCCTCTCAAACATTTGCTAGTAGCtgatttttgattttgattttttttggtgaaaaatatgCTCATCTAATCAAAAACATACCCTGTACGGAAGGGGTggaacaaaatatcaatatttagatTTCATTTGCGATACATTATTGATATTGGCATCAAATATggatgtgtttatatttttagtacAATATAAGCACCCCAAAGTAAGAATCCCAgagtttggtcatactggttgtcTAGTTTGGTTAAGGTGGTAGCTTGGAGGATAACCATGCTTGTAGACCAGATAAACCATCaaactttcaaaaaaaaaaaaaaaaccctgtgcTGGTCAAGACTTGAACCAGCTTGAGCTGACCAGACTGTTTATTTCAGCAAGGATGTACTGTCAATTCGTATTGTCTGAGTATAAATAAGATTACATATCCTctacataaagcaaaaaagATTATATGAGAGCTAATACATTTATTCAAACCACTTTTGTATAGTAATTGTGCATTTGATGTGTGAAGAAGGGTGTTTTCTGTGGAGGAtttgtaaatgttattttttttttttttattcaggcttTTGCATATACAACTATATATGTGatagtatgtatgtgtgtggcgttaatacttgattttaatttatgtatttaattaactgaattgtagataaaaaaaatataatgaagtatataataatattatatctaGTTCATACATGATGTTTATCATTAATAACTTATTTAAGATTAATAGTAAAAGGTCATGCAGCCTCTGTTCCCTATATGTTTATGAAGCAATAACACTTCAGCTCCGTGTGAATATTTAACGAGTGGAATGGAAGGAAGATCCTGTTCTGCAGACTTTTTACTCATTCATGACTTTGATGTCCATGGCTGTTTAAATTTGTATAGCCCTTCAGGCTGTAGTGACACCACATAGAACCCCCTGCGTCACACGGGGGTGATGCAAACATGACAAAGTATGGCTAGCTTGTGAAATACTAATATAATTTTCCTCTGAGATGTTCTAAAAGTAATATATTaaagtgtacagtatatgtgtcaTATTGTAGATAATGTTCATACTGTGTTCTGCCTGAATTCTAGATCTTCTTGCTATATTGCAGAGTAATACGTGTCTGAGGATTCGTCTGCTGCAGGTATTTGGTGAATATCAGTGGTTTGTGTTTGAAGCACTGATAGGAGAGTATGTGCAGCATTAAGTAGCTAATGAATGTGGTTCTCATTTATCAGTGTTTGCACActtgtaaatattgtataatgAAGTCCATATGTGTTTCTACACTTCATAGCCTTGAACTGAATCCaggtatttaaatgtttaaactgaTTATGTACTATTATGTATGTAAGAAAATGTCATCTATAAATATTTTGAACAATCCAA
>XM_022670358.1
GCTGTTAAAAACCTCGCTGTGCTGAATTCTGGGGACGAACCGGGGAGCAGTAGCGCTAGCAGCCCTGGCTAAACAGGAGACACCACCCGCAATGTCATTTATATTTGACTGGATCTACCGAGGCTTTAGTGGTGTACTACAGTTCCTTGGTCTGTATAAGAAAACAGGGAAGCTGGTGTTCCTAGGGTTGGATAATGCTGGGAAGACGACACTGCTGCACATGCTGAAGGATGACCGGCTGGGACAGCATGTGCCTACACTACATCCTACCTCAGAAGAGCTGACCATTGCTGGAATGACCTTCACAACATTTGATCTCGGTGGTCACGTACAAGCCAGGAGAGTGTGGAAGAATTATCTCCCAGCTGTGAATGGCGTGGTATTTCTTGTCGACTGTGCAGATCACGAGCGGCTCGCTGAGTCAAAGGTTGAGCTTGATGCACTGCTGTCAGATGAGACTATATCTAACGTGCCGATCTTGGTGTTGGGGAATAAAATCGATCGTCCAGAGGCAGTGAGTGAAGTGAGGCTACGAGAAGTCTTCGCTCTTGATGGACAGACCACTGGGAAGGGAAGCGTGTCACTGAAGGAGCTAAATGTACGTCCGTTAGAAGTCTTCATGTGCAGTGTTCTGAAGAAACAGGGCTATGGAGAAGGCTTCCGCTGGCTCTCTCAGTACATCGACTGAGTGGAGAGTCATGGACAAGATTCCTACTTCTGACTTCTGATAAGCATTTTGATAATGGGGCCCAGGAAGAGAACTGGGTATTGGTATAAAGACACTAATCCACCCTCAGAGTCCAACACTCTCAACATTCATCCTGGAATGTAAAATGCATATATGATTTTAAGTTATGTTGTCTAAAAACCTCAGACCTATAAAGGtatttaacattgttgtttggGCCAGTCAGCTATTCATGTCAAGTCACACATATGTACACTATTTCTGCTGTCTGTTTCTGAATATGTGTGCTTATATGTGACATATTTTATTGTAGTGTAATATCTATTTGGTATAATACAGCACTTTGAGTTTAGGCTGGAGCACGGCTTTTGCTGAAGTAGTAGGAAGTACTGCCAACATGAAGTCATATCGATAGAACCCAAAATGCAAAGACATACGTTTTAAAAGGCTTGGATTTTccctaaaaacatttataaatgaatGGAAGTCGCTTCCTGTGACTGGAGTGTTCACTCCCAGTCCTGGGTGAGGCTGTGCTTCAGCATATTTTGGCAATTTCCCTCCTTAAATCCATGTGTTAATTGCAGTGATAATATTGGAATAGCAGTATTAATGAGTATCTGGATCAGGCCAGTATCAGAATGGGAAAGGAGGGTAGAATAAATTTGATCCGATCCTGTTAGACATCTATACTAAAATAGCACACACTCAGACTTTGTGCTGAGTGTTTGAAAAGCTTTTAGAAAACATTGGGTCATACAATGAGGGCAATTTAGGGCACTGTAAtagtagaaaaaataaagccataatATTAAGTCATGCAATATGGCATTCCAGGAATTAAATCATAATACTTGGAGAATAAAGACATAATACTTAAGGAATAAGTTGTAATGTTTTGATATTTGAGTTGCTACTACCAGGAAAGTCGCATTATTATGACCAAAACGTTGCAAAAATTAGATATTAACAGTCTCCTGTTAAAATGAGGCAGGCTGATGATTTTGGTTGttatatactataataatatCTTGGTCTCTTAGTATAAGAACATTGGCATGTCTGTGCAGATCTTTATTTAGACAAAAGAAGCAGATGGACATGGAGGAAGAGTATTTTTGGTAAAGTTGCCCATTTCTACAGAGCTATCAGTGGGAACATCTCAATGCTAGTCTAAGAGGGCATGTAATTAAACCCTTTGACCATAATATTGTGACTTTTCTTGGTAGTTGTACCACATGGTGGTATTAATGGTGGAATTTTATgactttattttctaaataattatgactttattctcgaaAATATTAGTGTTATTCTTAATGtctacttattttacttttaaatccCGTCATAGGGCCAGGATTACCCCAAACtctacatttttaatatcagtATTGTAAACCAAAAACTAGTATTGTTCAAGCCTTCAGGACCGGGAGTAAATACCCAGGATCTATTATCTGCAGGTTTGCATACACCCTATTAGATTACatccctgctgaaaaatccagctCCTCTCAAACATTTGCTAGTAGCtgatttttgattttgattttttttggtgaaaaatatgCTCATCTAATCAAAAACATACCCTGTACGGAAGGGGTggaacaaaatatcaatatttagatTTCATTTGCGATACATTATTGATATTGGCATCAAATATggatgtgtttatatttttagtacAATATAAGCACCCCAAAGTAAGAATCCCAgagtttggtcatactggttgtcTAGTTTGGTTAAGGTGGTAGCTTGGAGGATAACCATGCTTGTAGACCAGATAAACCATCaaactttcaaaaaaaaaaaaaaaaccctgtgcTGGTCAAGACTTGAACCAGCTTGAGCTGACCAGACTGTTTATTTCAGCAAGGATGTACTGTCAATTCGTATTGTCTGAGTATAAATAAGATTACATATCCTctacataaagcaaaaaagATTATATGAGAGCTAATACATTTATTCAAACCACTTTTGTATAGTAATTGTGCATTTGATGTGTGAAGAAGGGTGTTTTCTGTGGAGGAtttgtaaatgttattttttttttttttattcaggcttTTGCATATACAACTATATATGTGatagtatgtatgtgtgtggcgttaatacttgattttaatttatgtatttaattaactgaattgtagataaaaaaaatataatgaagtatataataatattatatctaGTTCATACATGATGTTTATCATTAATAACTTATTTAAGATTAATAGTAAAAGGTCATGCAGCCTCTGTTCCCTATATGTTTATGAAGCAATAACACTTCAGCTCCGTGTGAATATTTAACGAGTGGAATGGAAGGAAGATCCTGTTCTGCAGACTTTTTACTCATTCATGACTTTGATGTCCATGGCTGTTTAAATTTGTATAGCCCTTCAGGCTGTAGTGACACCACATAGAACCCCCTGCGTCACACGGGGGTGATGCAAACATGACAAAGTATGGCTAGCTTGTGAAATACTAATATAATTTTCCTCTGAGATGTTCTAAAAGTAATATATTaaagtgtacagtatatgtgtcaTATTGTAGATAATGTTCATACTGTGTTCTGCCTGAATTCTAGATCTTCTTGCTATATTGCAGAGTAATACGTGTCTGAGGATTCGTCTGCTGCAGGTATTTGGTGAATATCAGTGGTTTGTGTTTGAAGCACTGATAGGAGAGTATGTGCAGCATTAAGTAGCTAATGAATGTGGTTCTCATTTATCAGTGTTTGCACActtgtaaatattgtataatgAAGTCCATATGTGTTTCTACACTTCATAGCCTTGAACTGAATCCaggtatttaaatgtttaaactgaTTATGTACTATTATGTATGTAAGAAAATGTCATCTATAAATATTTTGAACAATCCAA

Function

symbol description
sar1aa Orthologous to human SAR1A (secretion associated Ras related GTPase 1A).
sar1b Predicted to enable GTPase activity. Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; intestinal cholesterol absorption; and organ growth. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Is expressed in blastomere; digestive system; nervous system; pharyngeal arch; and primary germ layer. Used to study chylomicron retention disease. Human ortholog(s) of this gene implicated in chylomicron retention disease. Orthologous to human SAR1B (secretion associated Ras related GTPase 1B).

NR:

description
GTP-binding protein SAR1b-like

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07953 SAR1; GTP-binding protein SAR1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007250129.3 True 3706 mRNA 0.37 7 22046496 22054088
XM_022670358.1 False 3603 mRNA 0.37 7 22046496 22053903

Neighbor

gene id symbol gene type direction distance location
anapc16 anapc16,cj104 coding downstream 108048 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 124879 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 161055 21873489 ~ 21885441 (-)
LOC103047279 NA coding downstream 176222 21830839 ~ 21870274 (-)
LOC103044518 LOC108430683 coding downstream 376548 21655617 ~ 21669948 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 2885 22056973 ~ 22065003 (-)
zeb1 zeb1 coding upstream 2440227 24494315 ~ 24607305 (-)
mtpap NA coding upstream 3017366 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 3331602 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 3397024 25451112 ~ 25471966 (-)
G53868 ascc1 non-coding downstream 105146 21940602 ~ 21941350 (-)
G53856 NA non-coding downstream 129737 21907685 ~ 21916759 (-)
G53861 dnajb12 non-coding downstream 148916 21893426 ~ 21897580 (-)
G53858 NA non-coding downstream 157867 21886554 ~ 21888629 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 238040 21798459 ~ 21808456 (-)
G53918 NA non-coding upstream 102901 22156989 ~ 22158000 (-)
G53924 NA non-coding upstream 144160 22198248 ~ 22298487 (-)
G53926 NA non-coding upstream 263306 22317394 ~ 22449619 (-)
G53932 NA non-coding upstream 488082 22542170 ~ 22542524 (-)
G53933 NA non-coding upstream 495985 22550073 ~ 22550295 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1227087 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1258878 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1356074 20621569 ~ 20690422 (-)
G53382 NA other downstream 2196146 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2476118 19522702 ~ 19570378 (-)
G53996 NA other upstream 1037218 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2287312 24341400 ~ 24351936 (-)
svil NA other upstream 2732163 24786251 ~ 24920590 (-)
jcad NA other upstream 2896524 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3495262 25549350 ~ 25562139 (-)

Expression


Co-expression Network