efna5 (efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629)


Basic Information

Item Value
gene id efna5
gene name efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25780429 ~ 25966065 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254052.3
TCAGTCGGCGGCTACCATTGGTTTTACCTTGTGCCAGACAGAGtccgaaaaaaaagaaaagaaaaacaaaaaaaaacagaaagactgCATGGAAGAAGAAGGAGAGCTGCGCGCTTTCTTGGGCTCATCCCTCCCTCGTTATTTAGCAGTGGAATGAATGGTGGCACTGGTTTCTGTGGCTGTGTTTGTCTTCTGCCGTCAGTCCGCAGCCTCGCTCATGTTCTCCCGCAGGCGAAGCGACTCCTCCCCGCCGCCTCATCCGTGAcacttcagcagcagcagcagcgggagCCGCGCTGAGGAAGGAAGGAGACGAGCCTGCGCTCCGGTGGCTGGAAGCTCCGTGGAGACACACGCCGCGCCGGCTGAAACCAGCGAGAAAAAGTTGAGGAAAACGCAGAAGGACAGAGGAGCCGGACGGAGCTGTTCATTCTTCTCCTCCACACAGTTTTTGGACTAACCTGGCTGGGGTCGCGTGCGCTGAAACGGCGGACAGACCCTCAGAGAGACGCCGCGAACAGGAACGGAGCTCCGGCTGGTTTGGCTGCTCGAACTGAACCATGCTTTTTTAgctaaatcaaatattttttatttttctaagcGTTTAAGCTAGAAAAACTGCTGTTTTGGAGCTGTCtgcctgtgtgtttgtttgtttgtgaaagagggggaaatatataatatgtgtttGGAGGTCCAGTGAAGAAGTTCCAGCCCAGGAGAAACCTCCTTTTTTGAattttatgaattttaccagttttaTGAACACTGCCCTCTCGAAAGCCCTCTCAGCCTTGGgcttctctttcttgttttagAGGCTGTTTTACAGGCGAAAAATAAGCTCCCACACGTCTTTTCCCTACACCATTTCTCCCAGCTGCTTGTACGTATGTGTATGTTTCTGAGACGAGCTCAAGCGCTTTCTGAGGACGGTGTAGCCCAATGAGAGTGAACTGACGGCGGGCGAGAGTGAAGCTAAGCAGCCGCTGATTTCTAGTTCTGCCTCCACGGCCCACAGGACACGAGAGAGCCGCAACTTTCCGCCGTAGTGATGCTGCAGGTGGAAATGATCATATTCGTCTGCCTGATCCTTTGGATGTGTGTATTTAGCCAAGAGCCGAGCTCCAAGGTGATGGCCGACCGATACGCCGTCTACTGGAACCGGACCAACCCCAGgTTTCACCGAGGGGACTACCACATCGACGTCTGCATCAACGACTACCTGGATGTCTACTGCCCACACTACGAGGACTCGGTCCCTGAGGAGAGAACCGAGCGCTACGTCCTCTACATGGTGAACTACGATGGCTACAGCACCTGCGACGACACGGCGAAGGGCTTCAAGCGCTGGGAGTGCAACAGGCCGCACTCCCCCAACGGCCCCCTCAAGTTCTCAGAGAAGTTCCAGCTCTTCACACCTTTTTCCCTGGGTTTCGAGTTCCGGCCAGGCAGAGAGTATTATTACATATCATCCATGGTTACAGAGACTGGAAGAAAAGGCTGTCTTAAGCTGAAAGTCTTTGTGAGACCAGCGAACAGCTGTGTGAAAATCATAGGCGTTCACGATCGAGTTTTTGACGTTAACGACAAAGTAGACAATTCATTAGAACCCAGAGACGACACCAGTCACGAGTCAGCTGAACCCTCTCGGAGCGACGCAGCTAACTCAGGGCACGGGCCCCCTGTGCTCGGCCCCCTGCTGGCTCCTCTGCTCCTCGGCATCTCCGCGCTGCTCAACTTATAGCcccccttcttcttcttcttcttagtCCCAGACAAGCCCCTGCAGCCCCCAGCGCCCTTCTCCCACGAGACCAGAAGCCTTACACAGGCCGAGGGTTACGGGAGGGCTCCCAGACTCTCCAGGAACACTACTTACGGCCCTCGTGtttcgtttgtttttttgtttgttttttccaaatatttaaGTGGTCTTTCTCAGTCTGTGATtaaggatgaaaaaaaaattgattagtAGTGCAAAAGGAGAAAAGCTTTTAGCCAATCAGCTGAGACGCCCTAGCGTGATGCAGCATCTGGTCAGCAGGGATCAGAGCTTAAGGGGGTGGAGAGGTTCCACGTTTAGAATAAACTGTGGGTTTTAAGTTAACGATACTCTAAATGAACAGATACAAATGTGTACGTTAAGGGTGTGTCCTGGTGCAGTACAGATCTCCTAGCTCTGGTGTTAGAGACAAATATAGAAGGACTGTTTGCCTGTTCTTTCCTGTCGGCCTTCGACCCTAACAATTCGCAAAGTTCTTCGTAAAGTTCTAGAAAGTTCTAGATTTGGCTAAAAAAACTATGTTCTAACTGGATGACAGAAAGTCTGGACTCTACCCTGAagaaaaggggggaaaaaacacaccagcTGGTCATGTGGGCCAGTTGACCCTGGTGGctgagtgtgttgagtgtgtgtgtgagtgtgagtgtgtgttcactaACTGACTTGCGATTTTCTTGCGATTTGATTTGAAAACAAGGAGGAAGATAAGACACATATTTATTCTCTGCAAATGAGGACAATGACTTGTCTTAGTAGACCACACCACTAAAACagtgcttttttgtattttgtaggATAAACTTAACTGCAGCATAAATGCCTATATTTTTCCTATGACTTTTATCTATTGATATGAAATATCAACGTTAACGAATCATCAATTCAACAATTCTTTATCGTCATGACTGCATACGTCCAcctctgtatatacagtaccaaaagGGGCTGCACATGGTGTTCACTTCGGTTTCCTCCCCCCAAGAAGgaaaactaaatcaaaaacaCAGCATCTGTTACAAAACGATGAACGATGAATATCTACGTATATCCAGTTATTTGAAACACCTTCGCGCATCTTTTACCTTCTTTTTACGACTACTGTACATTGATATAGCCGCTAACTAGTGTAACTCAGcctcatattttaatttttttacattttttttttattacgacGTTAACAAACAATGACACTCGATGATCAATCTTAGGTACTCTGTGATCCCACTGTTTGCCTTCTGCATGGCAGCCTTGAATCTATGATGAATTTGTTTGTTGCTTTTGCCAGTTCAGGCCTAGAAGGAGCAggcttttagattttttgaatCTTTAGAATTTTTGAGTTTTGGgatagaatgttttttttttttgattgtgcGCAGTCACACCTCCGACCGTTTCCAGTTTTAAGTGACTCCTTAATGAGGTTCAGGCACGCCGAGTTCATGTTGTCATGTTGTGGCAGGGGAGATATTATTTGCGCTATTAAAAATAGTTGGTTGAAAGCGGCCTCTGCCGAGGGAGGCTCGGATTTCACTGGGataaatttttcttttcttttttgaccTTGCAGTCGGAGGGTTCCGCACGGAGCAACTAAAGACGGGCAGCGAggaagaaacagaaacagacgTGGTTTGAGTTTGGAGGAGAGGGGTTAGGGGAAGTGGTTCGTAGGCACTCGTGAAAATAAACAATAGCTGGGGAATTTTCTTtaacaatcaaacaaaaattGAGTAACTGTTTTCTGCCCTTTTGATTGTCAGCAGGCCTGTTTCGTTCCCtcgccagttttttttttttttttttttttttttttttgt

Function

symbol description
efna5 Enables ephrin receptor binding activity. Involved in several processes, including ephrin receptor signaling pathway; regulation of cytoskeleton organization; and regulation of focal adhesion assembly. Acts upstream of or within negative regulation of substrate adhesion-dependent cell spreading. Is anchored component of external side of plasma membrane.

NR:

description
ephrin-A5

GO:

id name namespace
GO:0007509 mesoderm migration involved in gastrulation biological_process
GO:0001756 somitogenesis biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254052.3 True 3615 mRNA 0.47 5 25780429 25966065

Neighbor

gene id symbol gene type direction distance location
lrrc2 lrrc2 coding downstream 159164 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 235902 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 240030 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 260203 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 274883 25486562 ~ 25505546 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 129046 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 628275 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 635398 26601463 ~ 26614549 (-)
LOC111192646 NA coding upstream 655592 26621657 ~ 26627863 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 674436 26640501 ~ 26643368 (-)
G54498 NA non-coding downstream 25369 25754722 ~ 25755060 (-)
G54490 NA non-coding downstream 51828 25728383 ~ 25728601 (-)
G54486 NA non-coding downstream 85434 25649454 ~ 25694995 (-)
G54471 LOC103036292 non-coding downstream 147208 25629795 ~ 25633221 (-)
G54466 LOC103035659,LOC108430319 non-coding downstream 175222 25602417 ~ 25605207 (-)
G54572 NA non-coding upstream 56785 26022850 ~ 26023104 (-)
G54574 NA non-coding upstream 173251 26139316 ~ 26177147 (-)
G54580 NA non-coding upstream 348527 26314592 ~ 26320493 (-)
G54592 cdc14b non-coding upstream 580007 26546072 ~ 26551536 (-)
G54613 mrps27 non-coding upstream 705843 26671908 ~ 26676623 (-)
fam240a LOC108441996 other downstream 218290 25549350 ~ 25562139 (-)
jcad NA other downstream 782309 24950612 ~ 24998120 (-)
svil NA other downstream 859839 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1428493 24341400 ~ 24351936 (-)
G53996 NA other downstream 2688454 23091306 ~ 23091975 (-)
LOC103042298 slc35d2 other upstream 592341 26558406 ~ 26569939 (-)
ccl28 NA other upstream 607335 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 795067 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1200621 27166686 ~ 27168510 (-)
G54873 NA other upstream 1503153 27469218 ~ 27473347 (-)

Expression


Co-expression Network