ubox5


Basic Information

Item Value
gene id ubox5
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26594340 ~ 26599322 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254070.3
CACTAGGTGGTAGCAGTCTTCCTGAAATCAGCTCTGTGtttgagaggaggaggaaatgCTCCGGTTGAACAGCTGATGGGCTCTTCCTGAAGGTGCTGCTATGTTGTGCCATGCATAAGTCACCATGGTTGTCAACCTCTGCCTGCCACACTTTCAAACCACGGCTCACTGCAACAAGAGGTCTTCAAGCCTCTGTTCCTCTTTTTCCCAGCTATGCGCAGATGGCTATGATGTTTCCAACCTCCTGGCATGCGACCCTTCTGCTCGACGGAGAGGTTTTAAGCTGGAGTACTTCCTGCGTCCTCCACTGCACGTAACTCTGCACTTTCGAGTGAGAGTTGAGCTGTGTCGTGTGGATGTTGAGCTTTGGCCTTGTGGTATGGACCAGGGAAGTGTCTCCAGGAAGCTCGAGATTCTTACCTGCTCTGATCCTGTCTCTGAAATATCAAAAGGTTCCCAGGAAGACAGTAGACAGTTTAAACTTGTGGGACGTTGCGAGCTAAGGGAGGATGTGCTTGCATGTTTTAATCATCGCAATTTCAAACATAGAATTCCTTTTCTTGAGGCACCACCTGAGCTTCCAGTGCAGGCTAAGCAACAAGAGCTCTGGAGTCGGGGCCTGGAGTCTCTGAACTCGGTGGCCCAACTTCGTATTAGTATACCCTTTGGTGGAGCTGGTTCTGCACTGGGAATAAAGTCGTTAGCAGTGTGGGGAGTTCCGGCTCGCTCTTGTCCTTCTGAGGAGCTTGCGAAGGTCCAAAAAGCACATTTTGACAGTTTGAAAGTGAAAATAAGACCTCCCTCTATATCACCAGTCTCATATCTTTCTACCTCAGACAAATCTTCTAGGCCAAACCCTGCACCCTCAGAAACCCCTATTCCAGACGAGTTTCTGGATCCTTTGACTCAGGAGCTCATGGTTCTACCATTGATCTTGCCCAGTGGCATGGTTATAGATAGTAGCACGTTAGAGGAGTACCAGAAACATGAAGCCACTTGGGGACGTTTGCCAAATGACCCGTTCACCGGAGTTCCATTTACACAAGACTCTAAACCACTTCCTAACCCTGTGCTTAAAAGCCGCATTGACAGTCTGATACTGCAGACAGGATGCACAAGAGTCGGAAGCAGGAATGGTCAGCTGAACAAACCTCACACTTCCAAACTTGTTGATCCTCCACATGCTGAAAGACCCACTTGCTCGAAAGACTTGGTTTGCATTGGAAACTTACAAGCTGGACCCAGTGAGACTGGCATCCAGCAAAGCCAATCAGCAGGTATTGAAAGTgaaacaaaactgcaaaaagATATTTATGTCAATAAAAATAAGACACATAATGGATTTACTGACTCCAAGCTAAAGGGAACTAAAAGGAAATGTGAGTCAAACCTTCCGACCAGAACAAATTGGACACCACCTTATTCATCCCCCTTGACCAAAATGCCCAAAATGGATGCAAGCCTCACATCCCTCACAGACTCCAGCCAAACCTCTCATGAGCAGCGTCTGTCAGACAGTTTAGACCAAGCACTAAGTTCTGCTCTGCAGGGTTTACCAACATATACCTCACAAAGCAAACTGAAGCCGGAGACAACATCAGGACCGAGCAGATGTGGGTCATGTTCTTGTTCCTTGACTGTTTATTCTGCAAGCTCACCAGCTTACTCTTTACCTTGCGGTCACCTGCTGTGTCGAACATGTCTGCGGAATGTACATCGTCCCGGCTCACAAAGACTGCCAATCACCTGCCCCACATGTAAAACCTCTGCCTCACCCAGTACAATCACACGAGTGCATCATTAATGTGTCAGTCCTGATTGTGAAGGGAAATAATCTTCTGGTTTTGATGTAATAAGCTAATGTTATGTTCATGTTTTGCTCTTTTGTCATTTGTAATACATGAAATATCAATAAACAGGCAAGCAAAGCAAAA
>XM_007254071.3
CACTAGGTGGTAGCAGTCTTCCTGAAATCAGCTCTGTGtttgagaggaggaggaaatgCTCCGGTTGAACAGCTGATGGGCTCTTCCTGAAGGTGCTGCTATGTTGTGCCATGCATAAGTCACCATGGTTGTCAACCTCTGCCTGCCACACTTTCAAACCACGGCTCACTGCAACAAGCTATGCGCAGATGGCTATGATGTTTCCAACCTCCTGGCATGCGACCCTTCTGCTCGACGGAGAGGTTTTAAGCTGGAGTACTTCCTGCGTCCTCCACTGCACGTAACTCTGCACTTTCGAGTGAGAGTTGAGCTGTGTCGTGTGGATGTTGAGCTTTGGCCTTGTGGTATGGACCAGGGAAGTGTCTCCAGGAAGCTCGAGATTCTTACCTGCTCTGATCCTGTCTCTGAAATATCAAAAGGTTCCCAGGAAGACAGTAGACAGTTTAAACTTGTGGGACGTTGCGAGCTAAGGGAGGATGTGCTTGCATGTTTTAATCATCGCAATTTCAAACATAGAATTCCTTTTCTTGAGGCACCACCTGAGCTTCCAGTGCAGGCTAAGCAACAAGAGCTCTGGAGTCGGGGCCTGGAGTCTCTGAACTCGGTGGCCCAACTTCGTATTAGTATACCCTTTGGTGGAGCTGGTTCTGCACTGGGAATAAAGTCGTTAGCAGTGTGGGGAGTTCCGGCTCGCTCTTGTCCTTCTGAGGAGCTTGCGAAGGTCCAAAAAGCACATTTTGACAGTTTGAAAGTGAAAATAAGACCTCCCTCTATATCACCAGTCTCATATCTTTCTACCTCAGACAAATCTTCTAGGCCAAACCCTGCACCCTCAGAAACCCCTATTCCAGACGAGTTTCTGGATCCTTTGACTCAGGAGCTCATGGTTCTACCATTGATCTTGCCCAGTGGCATGGTTATAGATAGTAGCACGTTAGAGGAGTACCAGAAACATGAAGCCACTTGGGGACGTTTGCCAAATGACCCGTTCACCGGAGTTCCATTTACACAAGACTCTAAACCACTTCCTAACCCTGTGCTTAAAAGCCGCATTGACAGTCTGATACTGCAGACAGGATGCACAAGAGTCGGAAGCAGGAATGGTCAGCTGAACAAACCTCACACTTCCAAACTTGTTGATCCTCCACATGCTGAAAGACCCACTTGCTCGAAAGACTTGGTTTGCATTGGAAACTTACAAGCTGGACCCAGTGAGACTGGCATCCAGCAAAGCCAATCAGCAGGTATTGAAAGTgaaacaaaactgcaaaaagATATTTATGTCAATAAAAATAAGACACATAATGGATTTACTGACTCCAAGCTAAAGGGAACTAAAAGGAAATGTGAGTCAAACCTTCCGACCAGAACAAATTGGACACCACCTTATTCATCCCCCTTGACCAAAATGCCCAAAATGGATGCAAGCCTCACATCCCTCACAGACTCCAGCCAAACCTCTCATGAGCAGCGTCTGTCAGACAGTTTAGACCAAGCACTAAGTTCTGCTCTGCAGGGTTTACCAACATATACCTCACAAAGCAAACTGAAGCCGGAGACAACATCAGGACCGAGCAGATGTGGGTCATGTTCTTGTTCCTTGACTGTTTATTCTGCAAGCTCACCAGCTTACTCTTTACCTTGCGGTCACCTGCTGTGTCGAACATGTCTGCGGAATGTACATCGTCCCGGCTCACAAAGACTGCCAATCACCTGCCCCACATGTAAAACCTCTGCCTCACCCAGTACAATCACACGAGTGCATCATTAATGTGTCAGTCCTGATTGTGAAGGGAAATAATCTTCTGGTTTTGATGTAATAAGCTAATGTTATGTTCATGTTTTGCTCTTTTGTCATTTGTAATACATGAAATATCAATAAACAGGCAAGCAAAGCAAAA
>XM_022670408.1
GTTTAGAAGAAAGTCATTCaaacatcattcttgtagccaAATTTACAGATGCTGACTACCTCATGAAGCCATtgagaaaataccaagagtgtgcagatctgtcatcaaagctaaatgtgGTGCTGCTATGTTGTGCCATGCATAAGTCACCATGGTTGTCAACCTCTGCCTGCCACACTTTCAAACCACGGCTCACTGCAACAAGAGGTCTTCAAGCCTCTGTTCCTCTTTTTCCCAGCTATGCGCAGATGGCTATGATGTTTCCAACCTCCTGGCATGCGACCCTTCTGCTCGACGGAGAGGTTTTAAGCTGGAGTACTTCCTGCGTCCTCCACTGCACGTAACTCTGCACTTTCGAGTGAGAGTTGAGCTGTGTCGTGTGGATGTTGAGCTTTGGCCTTGTGGTATGGACCAGGGAAGTGTCTCCAGGAAGCTCGAGATTCTTACCTGCTCTGATCCTGTCTCTGAAATATCAAAAGGTTCCCAGGAAGACAGTAGACAGTTTAAACTTGTGGGACGTTGCGAGCTAAGGGAGGATGTGCTTGCATGTTTTAATCATCGCAATTTCAAACATAGAATTCCTTTTCTTGAGGCACCACCTGAGCTTCCAGTGCAGGCTAAGCAACAAGAGCTCTGGAGTCGGGGCCTGGAGTCTCTGAACTCGGTGGCCCAACTTCGTATTAGTATACCCTTTGGTGGAGCTGGTTCTGCACTGGGAATAAAGTCGTTAGCAGTGTGGGGAGTTCCGGCTCGCTCTTGTCCTTCTGAGGAGCTTGCGAAGGTCCAAAAAGCACATTTTGACAGTTTGAAAGTGAAAATAAGACCTCCCTCTATATCACCAGTCTCATATCTTTCTACCTCAGACAAATCTTCTAGGCCAAACCCTGCACCCTCAGAAACCCCTATTCCAGACGAGTTTCTGGATCCTTTGACTCAGGAGCTCATGGTTCTACCATTGATCTTGCCCAGTGGCATGGTTATAGATAGTAGCACGTTAGAGGAGTACCAGAAACATGAAGCCACTTGGGGACGTTTGCCAAATGACCCGTTCACCGGAGTTCCATTTACACAAGACTCTAAACCACTTCCTAACCCTGTGCTTAAAAGCCGCATTGACAGTCTGATACTGCAGACAGGATGCACAAGAGTCGGAAGCAGGAATGGTCAGCTGAACAAACCTCACACTTCCAAACTTGTTGATCCTCCACATGCTGAAAGACCCACTTGCTCGAAAGACTTGGTTTGCATTGGAAACTTACAAGCTGGACCCAGTGAGACTGGCATCCAGCAAAGCCAATCAGCAGGTATTGAAAGTgaaacaaaactgcaaaaagATATTTATGTCAATAAAAATAAGACACATAATGGATTTACTGACTCCAAGCTAAAGGGAACTAAAAGGAAATGTGAGTCAAACCTTCCGACCAGAACAAATTGGACACCACCTTATTCATCCCCCTTGACCAAAATGCCCAAAATGGATGCAAGCCTCACATCCCTCACAGACTCCAGCCAAACCTCTCATGAGCAGCGTCTGTCAGACAGTTTAGACCAAGCACTAAGTTCTGCTCTGCAGGGTTTACCAACATATACCTCACAAAGCAAACTGAAGCCGGAGACAACATCAGGACCGAGCAGATGTGGGTCATGTTCTTGTTCCTTGACTGTTTATTCTGCAAGCTCACCAGCTTACTCTTTACCTTGCGGTCACCTGCTGTGTCGAACATGTCTGCGGAATGTACATCGTCCCGGCTCACAAAGACTGCCAATCACCTGCCCCACATGTAAAACCTCTGCCTCACCCAGTACAATCACACGAGTGCATCATTAATGTGTCAGTCCTGATTGTGAAGGGAAATAATCTTCTGGTTTTGATGTAATAAGCTAATGTTATGTTCATGTTTTGCTCTTTTGTCATTTGTAATACATGAAATATCAATAAACAGGCAAGCAAAGCAAAA

Function

NR:

description
RING finger protein 37-like isoform X1

GO: NA

KEGG:

id description
K10600 UBOX5, UIP5; U-box domain-containing protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254070.3 False 1934 mRNA 0.47 5 26594340 26599322
XM_007254071.3 False 1901 mRNA 0.47 5 26594340 26599322
XM_022670408.1 True 1961 mRNA 0.46 5 26594340 26598125

Neighbor

gene id symbol gene type direction distance location
fbxl17 fbxl17,LOC107570989 coding downstream 65136 26095111 ~ 26529204 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 628275 25780429 ~ 25966065 (-)
lrrc2 lrrc2 coding downstream 973075 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 1049813 25541306 ~ 25544527 (-)
LOC103036837 NA coding downstream 1053941 25532060 ~ 25540399 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 2141 26601463 ~ 26614549 (-)
LOC111192646 NA coding upstream 22335 26621657 ~ 26627863 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 41179 26640501 ~ 26643368 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 49217 26648539 ~ 26653586 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 285321 26884643 ~ 26920418 (-)
G54592 cdc14b non-coding downstream 42804 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 273847 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 417193 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 571236 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 599667 25939702 ~ 25994673 (-)
G54613 mrps27 non-coding upstream 72586 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 101274 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 127329 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 149754 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 205279 26804601 ~ 26810668 (-)
ccl28 NA other downstream 17915 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 24401 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1032201 25549350 ~ 25562139 (-)
jcad NA other downstream 1596220 24950612 ~ 24998120 (-)
svil NA other downstream 1673750 24786251 ~ 24920590 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 161810 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 567364 27166686 ~ 27168510 (-)
G54873 NA other upstream 869896 27469218 ~ 27473347 (-)
G54947 NA other upstream 1129389 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1427417 28026739 ~ 28043251 (-)

Expression


Co-expression Network