LOC103043953 (fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869)


Basic Information

Item Value
gene id LOC103043953
gene name fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26640501 ~ 26643368 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254073.3
tgaGGCCGTCAGTCTTCTCCTCTCGTGTGGTCTCTAGTCACAATGTCCTTCTCTGGAAAATATCAGCTGGACAGCCAGGAGGGCTTTGTGCCTTTCATGAAGGCTATTGGTCTTCCCGATGACCTCATCGAGAAAGGCAAGGACATCAAGAGCACCTCAGAGATCGAGCAGAATGGAGACCACTTTAAAGTGACTGTGACCACAGGGACCAAAGTCCTGGTCAACTCCTTTACTGTGGGCCAGGAGGCTGATCTCGAGACCCTGACTGGAGAGAAGATCAAGtctGTGGTGATGAAAGAGGGCAACAAGCTGAAGGTCACTCTGAAGGGCATTGAGTCAGTCACAGAGCTTGTTGATGGCAACACACTCGTCAACACCCTGACTCTGGGAAACATCATCTACAAGAGGACCAGCAAGCGTGTGTGAGGAGACTGTATAATAAGGAAACAAATGaattgggaaaaactgtaaaaattgtaataaaaaatcatttttacacGC

Function

symbol description
fabp1 Enables antioxidant activity. Involved in cellular response to hydrogen peroxide; cellular response to hypoxia; and negative regulation of cysteine-type endopeptidase activity involved in apoptotic process. Located in cytosol and nucleoplasm. Biomarker of IgA glomerulonephritis and hypertension.

NR:

description
fatty acid binding protein 1-B.1-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005737 cytoplasm cellular_component
GO:0005504 fatty acid binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254073.3 True 501 mRNA 0.47 4 26640501 26643368

Neighbor

gene id symbol gene type direction distance location
LOC111192646 NA coding downstream 12638 26621657 ~ 26627863 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding downstream 25952 26601463 ~ 26614549 (-)
ubox5 NA coding downstream 41179 26594340 ~ 26599322 (-)
fbxl17 fbxl17,LOC107570989 coding downstream 111297 26095111 ~ 26529204 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 674436 25780429 ~ 25966065 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 5171 26648539 ~ 26653586 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 241275 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 375764 27019132 ~ 27023268 (-)
LOC103022143 NA coding upstream 381254 27024622 ~ 27028494 (-)
tmem127 tmem127,LOC107552193,LOC107713035,LOC106579884,LOC106585551 coding upstream 386548 27029916 ~ 27034974 (-)
G54592 cdc14b non-coding downstream 88965 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 320008 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 463354 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 617397 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 645828 25939702 ~ 25994673 (-)
G54613 mrps27 non-coding upstream 28540 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 57228 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 83283 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 105708 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 161233 26804601 ~ 26810668 (-)
ccl28 NA other downstream 64076 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 70562 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1078362 25549350 ~ 25562139 (-)
jcad NA other downstream 1642381 24950612 ~ 24998120 (-)
svil NA other downstream 1719911 24786251 ~ 24920590 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 117764 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 523318 27166686 ~ 27168510 (-)
G54873 NA other upstream 825850 27469218 ~ 27473347 (-)
G54947 NA other upstream 1085343 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1383371 28026739 ~ 28043251 (-)

Expression


Co-expression Network