lzts3 (lzts3,LOC108265122,LOC107712591)


Basic Information

Item Value
gene id lzts3
gene name lzts3,LOC108265122,LOC107712591
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 26601463 ~ 26614549 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254076.3
GGTGGGCGGGGCAGAGGTGGGTGTGTGGCTCAGCTGATCCACGCAGCCTCCGCGACTACCGCCGAGAGAGAAGGAGATACGCGATAAGAGACACGGTTCGGCTGCACCTCCGCCTCCCCCCGGCCCTCACGACCACCGGGGAGAGAGCTGCGAGCGCGGGGGAGAGGGGGAGAGCGGGAGCCGGAGGAGAGGCGCCTCTCTGCGGCATCTCTCTCAGCCTGACGCCGCGCCTGGCTCTTGCTGCCGCTGCTGTAAACATGTAAGTGCCCACTACTAGCTGGTGGTACCACCCTGGCTCCAATGGCCCACATGACGGCTTGTGGCGCTGAGTGAGAAGCTGGGTTCAGGCTCCTCACAATGGGCAGCGTAGGCAGTGGTGTGGCTGGTGAACAAGAGTTTGCCATGAAGAGTGTGGGCACTCGTACCACCCTCCCCCGTGGCCCGCCACTGTCACGCCGAGGCCCCGCAGAGCGTAGCTTCAGTGCCGAACGTCTGCCTCCGCCACCCTCCACCTCTGAGGGCACAGGCTCCAGCGACGAGAGGGGGGGCAGCAGCATCACCACGGACCGGCCCCAGCTCACAGGCTGTgagtccaccaccatctcctctAACCTAGAGAGAGTTCCCTCTGTCGGTGAGCGGCTGGAGGCCAGCGGGGGAGTGAGCCGCAGGGAAGGTCCCAGGGGGGCGGGGGGCATGGGCATGGACACCTGTGGGACTGGGATGGGGCATGCTGGTGAGAGACACAATGATGGCATGGCTCCTGTGAAGATTAGAGAGGGGAATGCTGCAAAGACAGATGGTCGCACACCGCCCAAGATTATGACCATGTCTGGGAAACTTGAACAGGACAATTCTGGATTGGTGCGGCCGTCTGCCTTCAAACCCGTAGTGCCAAAGAGCTTTCACTCAATGCAGAACCTGGTTGGACATGCTGGAAGTGGAGGGGGTGCTGGAGGTCGGTCTGCTGGAGGTACTGGAGGTTCTGATGCTCCCCAGTCTCTTATAGAGCAGGAGAGTCCAGAGAGGGAACGGGCTGGAGGGAACGGAGGCCAGGGAGGCATGTCTGATTCTGGGAGGAACTCGCTCACCTCTCTGCCCACTTACACAGGACCTGGCTCGGCTTACGGCCCTCCTCCTGCCCTCGGCCCCCTTAGTGCATCAACCAGCCATATCAACAGACTGGGCACTGCTGCTGCCCCGCTAGACAAACTGGACAAGCCTAGCTACCAGAACGGTCTGAGCATTTCTGACAGTGGACGCTCATCTTCTGGAAAGAGCTGTTTGTCTTATCAGAGACTTTGTCACATGGGGGAAAGGCCTGCTGCCGTTCGTCCTTCCCCCTCCTCAGATGACATAATACAAGACTTGGAGGATCGACTGTGGGAAAAAGAGCAGGAGGTCCTCCACATGCGCCGCAACCTGGACCAGAGTGAGGCAGCCATTGTGCAGGTGTTTGAGGAGAAGCAGCGAGTGTGGGAGCGCGAGATGGAAGAGCTGAGGCAGAACTACGCTGGGCGACTGCAGCAGGTGACCCGGCGAGCGCAGCGCTCTCAGCAAGCCCTGCAGGCACAGATCACCCGGCTGCAGCAGGACAAGAGCAGGCTCCAGGATGAGATTGGTGCCCTGCTGGCCCAGCGAGAAGAGCTGGAGAGAAAGTGCCTGGACTACCGCAAGGAGCAGGCTGACATCCTGCCCCGGCTGGAGGAAACCAAATGGGAGGTGTGTCAGAAGGTGGGCGAGATCTCCCTGCTGAAGCAGCAATTGAGGGACAGTCAGAACGAGGTGACCCAGCGAGCAGGAGAGATGGTGGCCCTGAGGGGCCAACTCAAAGAGCTCAATGCCCAGCTGAAGGAGAGGGAAGAAGCTATGCTTGGATTAAAGGACTCCTATAACAGCAAGAGTCGTGAGTTGGAGAGGTGTGAGGGAGAGCTCAAAAAGACACTGGCTGAGGTATCGATACTACGGGACAAGCTAGTGGTGTTTGAGGCTGAAGTCCTGGGCCTGAAACGAGCTCTGGGTGAACTGAGTTACACCAGTGACCACTCGGTGGGCAGTCTGGGCAGCAGCCTcagcggcagcagcagtctGCCCTGGGGCGGCCTGCACTCGCCCCGCACTCCTGAGGGCCTAACACCACTGTCCCCCCTCAGCCCTGTGGTAGACACCTTGCTGAGCCTTCAGAGTGATGAAGCCAAGGCGCAGAGACAGGAAGCAGGCGAGCTGCGGCAGCAACTGGAGCGAATGCAGAGCGAGTTGCGGCTGGAGCGGCAGCAGCGCGAGCGCCAGGCTTTCACATTCGCCCAGGAGCGTCACACCTGGCAGGATGAGAAGGACCGTGTGCTCAAGTACCAGGCCCAGCTGCAGCTCAGCTACGTGGAGACATTGCAGAGGAACCAGGCTTTGGAGGAACGCGTTGGACAGCTGGGAGCCAAACTGACCACCACTCCCAGTTCACCACCTCCGAGCAGCCTGCCAGTCCACGTCCCGGTCACAGTTACTCTCACCCCGGCTGCGGATGACTCCAAGTCGGCCTCCTTCAATCAGCTGACTCCGCCGTGGCCTGGACCTACTCGCCTGGAGAGAATTGAGTCTACTGAGATTTAGCGTCCCCGCTGCATATCGACTTGATACAGAGACAATCGACTTTCATTCAACTTATGTTGCTGAAAACggtttgtttaaatgtgtacCACTTACAGTCCCAAATATTCACAAAGGGGCCCAACCGAGGAGACTTGCTTAGGGAACAAAGAACATGCAGTTATAAATCAATGTGCTGGAAAGATAAAGGACTCAAAAGTCTTATGTCCTACATACAcacgcgtgcacacacacaaaaacacactgatatCCTCTAAATATCTAACTCAAGGGATTGAGGTCATTAGGAAACAAAATGGGAAAGAAAGTATAAAGGTCTGAAAAATATCTACCAGGGGTCTTTGTATAAAtttaagggtgtactcacactaggtaATCCGTACTGTGCCCAAACATGTTTCCTCCACAAAGCCTGGTTCTTTGGACTAGTACAATGAACCGTGCCTGGGCCTGCTTGAAGACCTGAAGAAGTGTGCTCACTAACTGTGCCCAAGCATGGAATGTTTATATGACATCAGTGATGCTGCCTCTTTTATAACGTGCAGCACAATTAACCAAACATTCTTGTGTTGCACAATCAACAAAggaaaaatctaattaaatacAATCTGCATCAGCTGTCTGATCTGAATTGTGCctgtttattcttttttttttataaataaaacaggaaaaacatGAGAGAAGAACAAAGCAATGGATGGGATGGTAATCCATCAATAGTTTATCCAGGGAGGATTATTGTTTTTAGAAGTAACAGTAATAGGAGtggtattgtttttatttatttattagtttataatttatttattatagtagGACCAAGAACAGACATTAAGTCAAAAGAGGAGTCAGAAGAGTATTTGTAATGGGATACacatacacttaaaaaaagctGGGTATAagtttattaaagtttattaagTTTATAAATTAGAAATGGTAGTAGTTCTAGCTGCATTTCTGTTCTTGTTATATGAAATTAGTTCAATATTAAATCTGCCATCATTTATCGTCTTTATCGTACTTAGGTTCCGATCATAAGTGGCCAGTGCATAGTACAGGTGGCAATGATATGTGAGATCTGACCACAAGCTGTCACTggagatgcatttaaaatgctTGGTGTGAACAACTTTTCATATCACCCAGGATGTGATGCCACATATGAACAAGGAAGACGTTTAGTTTAACGTGGTTGAAGGGGCCACCATCTTTCTGTGTAAAATTCTGTGCATACGCAGTCTGATTTAGGCAATTGATGCAGATTGTTTTCTTAAACACATAAATCATCTTTGTGAGAATGTAAGCATGCTTGGACACGGAATGTTAAGCATGATAGATGTGAAAAGGCGAAGCTGCTTCCTGGGTGGGCCATTGAAGGCTGTTCCAAAGTGAAAGATTCTGTGTGTACAGCAAAGAAATGTAGCCAATATTTGGAATTATATGAAGgatgcaactgatgtatccttcgaAACCTTGATTGTGGGCATTACAAAATGGAGAAAAGACTAGTGcagagtttatttaaaaatatttgtgaattatttatgaattatttctgtaaagaaatgaaaaagcaCACAAGTTTTGGACCCTAGTGTCATCACATGATGCTCGTGCATGATGTCACCACAAAGCCTTGTTACACTGACCAAAAGGCTTTTGAGACTCCTACCACGACTACACTTTGGAATGCAGCTACTCTGAGGGGCAATTGTGCTCGGGCACAGTACAAGGCCACCAGTATGGCCTAGTATGGGTACACCCTAAGATGGAGAATGTTGTTTTAAAGGGATCTACAATCAGCTTAGAGTGTTCCAATTAGAGGAAAGGCACAGGCGTGTTTCAGTTATGTTTCAGGGATACTGGGGAACCTGGTTCTCCATCACTGCACAAAAACTTGCAGTGACTAAAAATTGATCACAAAGGGATCTAAGGTTTATCAACAAAGAATCTTTAAACAGATCCCACTCGCAAACAGAAGtacttgaaaaaaatatatagtttttctttagtttttttaagttaGAAAATGGGGAGACCTAAAACCAACTTCTAAACTGACCTAAACTTGCTTTAATTTATTCTTAAACTTGAGTTCCTTTGTAGACCAGGATTAGGAGAGTGAATATGGTTAGACAGTAAGCAAAGAGAGCTGAAAGAGCCGAAAGTCCAGGTAATGAACATTGCTCTCTCAAAGAAAGGACAAAGACAGACTTGCTGCTATGTACTAGTGTGATGTTCTGCTGTGTTATTGGAAGACTGGCTATGGATTTGGGTGTTGATCATCGCTATTTATGTAAACATGTTAATATACCAAGATACTCCGTGTGAATATTTTGAAAaagatgattattattattactattaattattgtGAACCAATGAAGCAGACAAGTCGACATTACTTTCTCAAACATGGTACACATAGGCCTACCATTTTATCTCTTATATGATACAATGCAACAACCATATCCAAACCCATGTTCCTTTTGATGTTGTTGTAATTATGGTATTGTTTTAGAGCGCAAATGCTAACTATGTTTTTAtactcatttttattgtttgtatttatgttAGTGTAATGGCTTGATGAAGAGCATACCCAAGCAGAATCAGAAATAAAGACACAAGTCTTTTTGTGCA

Function

symbol description
lzts3 Predicted to enable PDZ domain binding activity and protein self-association. Predicted to be involved in protein homooligomerization and regulation of dendritic spine morphogenesis. Predicted to be located in postsynaptic density. Predicted to be active in dendritic spine.

NR:

description
PREDICTED: leucine zipper putative tumor suppressor 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254076.3 True 5253 mRNA 0.49 6 26601463 26614549

Neighbor

gene id symbol gene type direction distance location
ubox5 NA coding downstream 2141 26594340 ~ 26599322 (-)
fbxl17 fbxl17,LOC107570989 coding downstream 72259 26095111 ~ 26529204 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding downstream 635398 25780429 ~ 25966065 (-)
lrrc2 lrrc2 coding downstream 980198 25612122 ~ 25621265 (-)
LOC103035302 NA coding downstream 1056936 25541306 ~ 25544527 (-)
LOC111192646 NA coding upstream 7108 26621657 ~ 26627863 (-)
LOC103043953 fabp1,LOC103043953,LOC108430333,LOC107704576,LOC107573351,LOC107726869 coding upstream 25952 26640501 ~ 26643368 (-)
LOC103043649 LOC103043649,LOC108430332 coding upstream 33990 26648539 ~ 26653586 (-)
LOC103024013 adra1aa,LOC108430341,LOC107553034,LOC107699645,LOC107671010,LOC107713032,LOC108264882,LOC105894890 coding upstream 270094 26884643 ~ 26920418 (-)
LOC103022658 es1,LOC108430344,LOC105894898,LOC107553036,LOC107671040 coding upstream 404583 27019132 ~ 27023268 (-)
G54592 cdc14b non-coding downstream 49927 26546072 ~ 26551536 (-)
G54580 NA non-coding downstream 280970 26314592 ~ 26320493 (-)
G54574 NA non-coding downstream 424316 26139316 ~ 26177147 (-)
G54572 NA non-coding downstream 578359 26022850 ~ 26023104 (-)
G54524 NA non-coding downstream 606790 25939702 ~ 25994673 (-)
G54613 mrps27 non-coding upstream 57359 26671908 ~ 26676623 (-)
G54623 NA non-coding upstream 86047 26700596 ~ 26701882 (-)
LOC111192648 NA non-coding upstream 112102 26726651 ~ 26734830 (-)
G54651 NA non-coding upstream 134527 26749076 ~ 26749279 (-)
G54656 LOC108430339,LOC108265827,LOC107699644,LOC107560275,LOC107552154,LOC107714550 non-coding upstream 190052 26804601 ~ 26810668 (-)
ccl28 NA other downstream 25038 26573400 ~ 26576425 (-)
LOC103042298 slc35d2 other downstream 31524 26558406 ~ 26569939 (-)
fam240a LOC108441996 other downstream 1039324 25549350 ~ 25562139 (-)
jcad NA other downstream 1603343 24950612 ~ 24998120 (-)
svil NA other downstream 1680873 24786251 ~ 24920590 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 146583 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 552137 27166686 ~ 27168510 (-)
G54873 NA other upstream 854669 27469218 ~ 27473347 (-)
G54947 NA other upstream 1114162 27728711 ~ 27731079 (-)
LOC103039900 NA other upstream 1412190 28026739 ~ 28043251 (-)

Expression


Co-expression Network