LOC103035302


Basic Information

Item Value
gene id LOC103035302
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25541306 ~ 25544527 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260763.3
GGAAGCCGTTACTACTGAGCATGCGCAGAGAAACTAGCCGACTAGCCTTCTTCTAAGCAACCAGACTGAAGAGCAAATCCAAAACCTCCTTTTTGTCAGTGTTCAGAATTAAGAAACCACAAGGCCAACGGTGATATTCTTGCTGTACTgcattaatggatggatggatgtatgctTGCATTATAAAGACAACCAAGAAAACCAGCATGATTTAATGCTCATAACGCATAGGAACCTTGAGGACTTCCCATGTCGTGTTTTGAAAAAATTTACACCTTGGTTTCCATCTGGTGCTGACAAATATTTGCCAATCAAACCTAAAAAGGCTCCCCCAGTAATTTCACCCAAGCATTTAAAAAGTGCCAGATGCTGCCTGCAGAGGGAAGAGTTTGTTGTTCTCAGTTGCTGTCCTGATGATGAACAATTTGAAGAGGCCCGCAAGAGAAAATTTGCAACAAGCTCAGAAGGCATCGATGGAGAGTGGAATAATGCACAACTTGAAAATGAATCAAAGAAATTTAGACGGTCATGGAGTGTCTTttcacataaaacaaaaacagctgaGAGCGTACAGCCATTCTCTAGACAGTTCCACATGGCTATTCAGACATTTGGACTTCACCACCACCAGAGAGCAAAATGGATTATTTGTGAGCTAAACTGTGCACCAAACAGTATTGAAGAGGTCTGGTCCAGACTCAGCCATGCCATTAAGCACTCCAGGCTTCCAACATGCAATGCTAATTTACAGAGGAGTTTGGCACAGATTTGGGTTTACTCAGATGTGTTTTACTGTGAATATATTGGTCATTTCTTGAGACACAAATTACAGCTCTCAGGGGAGATTAATTTAGCAGTCCATAAACTGGggaacatttttaagttgtaaatatgtTGTAGATTGTACAGTTAATGTTTTTACTACAGCCAAATCATTAAGGAACAAGTCCTGATTGGCTGTCACTGATTTCTaaattttcaataaaatatgttGTGGACAACATGTTAAGGCAAAAATCTATGAAATCTATTGtcattaattgtaattaattaaataattattgtcaTTGTTCATTGTAAGTTTTGAAAGTCCATATATTAACGTCTGAAATTTGATTGAACTTAAAATGATTTTCATGGTAGAAGAAGTCATTGTCAACATgatatggacatgacctcaatattttattatgctgacctcaatattgcATATTTAGTTGACTTTGTAAGAAAAGCAGAGTAACATAAGCTGGTATGTcaactttattacattttttattaattattgtatttatttatgtatttaaacattttttccagagtctaaatatccaaaatattatataaaataacgtgtaaatgcataatttatttctttttgtaaaTTGGAATTTACACATGCATCTGAAAGAAGTATGAATTTGGatataaaatgtttagtgtCTAACTACTTTGAGTTTCAGACACACTGCGAATGTTCTTGGCAGTTattaaaatctacttttttgAGCAGTAAGAAAACACAATTtagcattttaataaatacaaataaatgtaagtACTGTAGACTATTAGTGTAGTCCAGCACGGTTTGTAATTTCCATGCTCTAAGCCTATGTTTAGTCCACAAGTCAAGatctgatttttggcatatctagattggTCCAGATAGATTTTTGATAGTTTAGACAGCCAGATACCATATTAAATTTCAAGGTGGTTTAAAATCTAATTGCAATTGCAATTAGTATGCGCCTTAGTCTGGTCCCTCTAACTGGATTTTAATGTTCCTTGTCTTGGAATGTGACTCAAGGGTCTATCTAAGGTCCCTCTCTCAAATGTCTCAATAAATGCAATTTGGGCTTTATTTTCATGCATTGCATTTGTAGTTCcgaaatttaataaaatttcaCTGATTTTACGACA

Function

GO: NA

KEGG:

id description
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260763.3 True 1926 mRNA 0.35 2 25541306 25544527

Neighbor

gene id symbol gene type direction distance location
LOC103036837 NA coding downstream 907 25532060 ~ 25540399 (-)
LOC103035606 LOC108441999 coding downstream 21080 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 35760 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 57322 25473885 ~ 25483984 (-)
cep120 cep120,zgc:163014,LOC107712640 coding downstream 69340 25451112 ~ 25471966 (-)
lrrc2 lrrc2 coding upstream 67595 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 235902 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 550584 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 1049813 26594340 ~ 26599322 (-)
lzts3 lzts3,LOC108265122,LOC107712591 coding upstream 1056936 26601463 ~ 26614549 (-)
G54448 NA non-coding downstream 16137 25524104 ~ 25525169 (-)
G54358 snx2 non-coding downstream 194609 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 197893 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 249332 25099176 ~ 25291974 (-)
trnak-uuu NA non-coding upstream 21747 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 22614 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 22866 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 23118 25567645 ~ 25567717 (-)
trnak-uuu_4 NA non-coding upstream 23370 25567897 ~ 25567969 (-)
jcad NA other downstream 543186 24950612 ~ 24998120 (-)
svil NA other downstream 620716 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1189370 24341400 ~ 24351936 (-)
G53996 NA other downstream 2449331 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4721897 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 4823 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1013879 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1028873 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1216605 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1622159 27166686 ~ 27168510 (-)

Expression


Co-expression Network