LOC103035606 (LOC108441999)


Basic Information

Item Value
gene id LOC103035606
gene name LOC108441999
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25510629 ~ 25520226 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260765.3
TTTGATTTTCAAATCACAAGGAGTCAGCTAATCACTTATTAACTGGCTCAGAGGGTCAGAGACCTCCTCATCAGCTGAAACCCAAAAACACAGATGGGTCTTTTATCACGTAGTCATTTCAGTGTTTGATGGAGAAACCGTCCTCCTGTGATGAGTCTGTTcacaaaaacagaaatgatGCAGCCCGACCAACGTGTTCTGTCCCACCTAGTCAACAAACTCTGCTTGAGTCCCAGTGCCACAATGCTGAAAATGGAGCAGAGGAGAGGACAAGAACAGTGATAAAGTCGGATGCATCTTTATCTATGGATACTGAATCTGAAATCttgggaaagagaaaaaaaaccacACTAATTAGGTCCAAAACATTTGACCCCTCACTTCTGTCACATGTCCAAAGTGACATAGAGACGAAGATTGACAGGAAGAAGCACCACTCTTATCATTTTCCAAGGTCGAATTCTCAATATCACAAGGTTTTCAAAGACATCAGTGAGAATGAGCATCTGAAACAAAGTTACACCTGTGCCTTGCAAAAGGATATTCTCTACCAAGGGAGACTTTTTGTGTCTGAAAACTGGATCTGTTTCCATTCAAAAGTCTTCGGCAAAGACACTAAGATCTCTATCCCAGTCCCATCTGTAACAGTAATAAAGAAAACCAAAACTGCTATTCTAGTGCCAAATGCTCTGGTAATTGCCACAGCACAAGAGAGGCATGTCTTCGTGTCTTTCCTGTCCCGAGACACAACCTACAAGGTTCTGATGTCAGTATGCATACATCTTCATGACAAGTGTCTAGGAAGCAGCCCTATTCCTTCTTCTGCAGACAGAAACTACAGAGTGACTCCTTCTGCACTTCCGATGGATTTCTCAGGAGATCTGTCAGATCTGGATGGCCCAGTAATTCAGACGAGGCAAGAATTGGGAGACAGCAGTAGCTCAGAATCTCCAGATTCACCAGAATTCGAGAAAATCACAGAATTCCCAAAACGTTCCCAAAAGGTTTTTCTGAATGTAGTGAAACAAGACAATGCACCAGACTCCCACCCACAGCAAACAAAACATGAACAAACCGTGTATGATGTAAAAGCACTGAGACCGAATTCACTTAACATTCTTCTGATGTTCTACCTATTTCTAGTCTGCATTCTGGTCCTGTCTTCATGTTACATGGCTTTCAAGATAATATCTCTGGAAGAGAGGCTAGTGTCTCTCGGCTCCTTGGCTGAGTTCTCTCACAATAGAGATGACTATCACAGCCTTTATACTGAGGATACATCTGAGATTTATACTATTCTCTCAGTGAACCTTGTGAAGTTGGAAAAgATTCAAAGAAACCTACAGAAACTACTGGAGGACACTTAATGATGTTAAATGGTAAATAATTGCTAATCAGTGGCAGACAACAAAGACTAAATGTCAACAGCAGACCCACAAAGAGCACAGACATGGTGTGGGAGTTAGTGTATTTCTCTTAattcaaaaaatatgtttatacatAGTTTGTGCatatgtattttactgtaagattttacaaaaaaaactgtgaaaaaactcTTTCTTgtctcattttgttttttttacaaagttgAGTTGTGACTGGTGGCTGCATTATGCAAACACAAGAGCTTGGTAATTGAGATCCTGATTAATTATTGATCTAAGTAATGAAGTAATCATGAAATAAAGATTAGTTGGTCCAgtgttttcttttgcttaagGAAGAAATGTGTATTGTTTATTACTGAATGGTTTTGACAAGTGCAATATTTCTGTTTGATCCAAATGAAATAGAACTGTATTATAAGTTAAGGATGTATAAAGATGTTGTCATATAACACAGTATAATTTAAAATACCTCAAAATGGTAGTCATGCAATattgtatatgtaaatataatgtCAGTTAATGTCAGTAAGAACTTTCTGTAAATGTCAGTATTTACTTTTTGGATATGTGCCTTACTTTGAAATAAATCTCAGCACATGTGAAATGA
>XM_007260767.3
CCACACAGTAGCGCCAGTAAGTGGTATTAAAACCTTtttgtttgagaaccactgtttTAGAACATTTGTTGGATTTTAAACGTTGGGACAACGTTGCTGctatttaaaacaacaacagctgGTTGTCAGAACGATGCCAGTGCTGACCGTGTGCGCTGGGGCGCGCGGTCGAGTTCAGTAGTAACTCGATACTCAGTGTAATAAATGCGTGACGTACCTGTGGCACATTCACCGCGAGCGCAGCTCTCAGGATGTTAAACACAGACTAACGGACTAACAGCCCGCAGTTAAAGAGCTAATGGATATTAAACCGGGGAATATTACCGCGCGCGTCGGCAAGTAGAAGTTTCAGCAGCTTCATGTAAGATATGTATCGcctctcagcagcagcagcagcagcaggacaaGGACTTTTATCAGACTGAGTGCTCTGTTTCTGTAAAGCCACAATGCTGAAAATGGAGCAGAGGAGAGGACAAGAACAGTGATAAAGTCGGATGCATCTTTATCTATGGATACTGAATCTGAAATCttgggaaagagaaaaaaaaccacACTAATTAGGTCCAAAACATTTGACCCCTCACTTCTGTCACATGTCCAAAGTGACATAGAGACGAAGATTGACAGGAAGAAGCACCACTCTTATCATTTTCCAAGGTCGAATTCTCAATATCACAAGGTTTTCAAAGACATCAGTGAGAATGAGCATCTGAAACAAAGTTACACCTGTGCCTTGCAAAAGGATATTCTCTACCAAGGGAGACTTTTTGTGTCTGAAAACTGGATCTGTTTCCATTCAAAAGTCTTCGGCAAAGACACTAAGATCTCTATCCCAGTCCCATCTGTAACAGTAATAAAGAAAACCAAAACTGCTATTCTAGTGCCAAATGCTCTGGTAATTGCCACAGCACAAGAGAGGCATGTCTTCGTGTCTTTCCTGTCCCGAGACACAACCTACAAGGTTCTGATGTCAGTATGCATACATCTTCATGACAAGTGTCTAGGAAGCAGCCCTATTCCTTCTTCTGCAGACAGAAACTACAGAGTGACTCCTTCTGCACTTCCGATGGATTTCTCAGGAGATCTGTCAGATCTGGATGGCCCAGTAATTCAGACGAGGCAAGAATTGGGAGACAGCAGTAGCTCAGAATCTCCAGATTCACCAGAATTCGAGAAAATCACAGAATTCCCAAAACGTTCCCAAAAGGTTTTTCTGAATGTAGTGAAACAAGACAATGCACCAGACTCCCACCCACAGCAAACAAAACATGAACAAACCGTGTATGATGTAAAAGCACTGAGACCGAATTCACTTAACATTCTTCTGATGTTCTACCTATTTCTAGTCTGCATTCTGGTCCTGTCTTCATGTTACATGGCTTTCAAGATAATATCTCTGGAAGAGAGGCTAGTGTCTCTCGGCTCCTTGGCTGAGTTCTCTCACAATAGAGATGACTATCACAGCCTTTATACTGAGGATACATCTGAGATTTATACTATTCTCTCAGTGAACCTTGTGAAGTTGGAAAAgATTCAAAGAAACCTACAGAAACTACTGGAGGACACTTAATGATGTTAAATGGTAAATAATTGCTAATCAGTGGCAGACAACAAAGACTAAATGTCAACAGCAGACCCACAAAGAGCACAGACATGGTGTGGGAGTTAGTGTATTTCTCTTAattcaaaaaatatgtttatacatAGTTTGTGCatatgtattttactgtaagattttacaaaaaaaactgtgaaaaaactcTTTCTTgtctcattttgttttttttacaaagttgAGTTGTGACTGGTGGCTGCATTATGCAAACACAAGAGCTTGGTAATTGAGATCCTGATTAATTATTGATCTAAGTAATGAAGTAATCATGAAATAAAGATTAGTTGGTCCAgtgttttcttttgcttaagGAAGAAATGTGTATTGTTTATTACTGAATGGTTTTGACAAGTGCAATATTTCTGTTTGATCCAAATGAAATAGAACTGTATTATAAGTTAAGGATGTATAAAGATGTTGTCATATAACACAGTATAATTTAAAATACCTCAAAATGGTAGTCATGCAATattgtatatgtaaatataatgtCAGTTAATGTCAGTAAGAACTTTCTGTAAATGTCAGTATTTACTTTTTGGATATGTGCCTTACTTTGAAATAAATCTCAGCACATGTGAAATGA
>XM_015608712.2
TTTGATTTTCAAATCACAAGGAGTCAGCTAATCACTTATTAACTGGCTCAGAGGGTCAGAGACCTCCTCATCAGCTGAAACCCAAAAACACAGATGGGTCTTTTATCACGTAGTCATTTCAGTGTTTGATGGAGAAACCGTCCTCCTGTGATGAGTCTGTTcacaaaaacagaaatgatGCAGCCCGACCAACGTGTTCTGTCCCACCTAGTCAACAAACTCTGCTTGAGTCCCAGTGGTCCAAAACATTTGACCCCTCACTTCTGTCACATGTCCAAAGTGACATAGAGACGAAGATTGACAGGAAGAAGCACCACTCTTATCATTTTCCAAGGTCGAATTCTCAATATCACAAGGTTTTCAAAGACATCAGTGAGAATGAGCATCTGAAACAAAGTTACACCTGTGCCTTGCAAAAGGATATTCTCTACCAAGGGAGACTTTTTGTGTCTGAAAACTGGATCTGTTTCCATTCAAAAGTCTTCGGCAAAGACACTAAGATCTCTATCCCAGTCCCATCTGTAACAGTAATAAAGAAAACCAAAACTGCTATTCTAGTGCCAAATGCTCTGGTAATTGCCACAGCACAAGAGAGGCATGTCTTCGTGTCTTTCCTGTCCCGAGACACAACCTACAAGGTTCTGATGTCAGTATGCATACATCTTCATGACAAGTGTCTAGGAAGCAGCCCTATTCCTTCTTCTGCAGACAGAAACTACAGAGTGACTCCTTCTGCACTTCCGATGGATTTCTCAGGAGATCTGTCAGATCTGGATGGCCCAGTAATTCAGACGAGGCAAGAATTGGGAGACAGCAGTAGCTCAGAATCTCCAGATTCACCAGAATTCGAGAAAATCACAGAATTCCCAAAACGTTCCCAAAAGGTTTTTCTGAATGTAGTGAAACAAGACAATGCACCAGACTCCCACCCACAGCAAACAAAACATGAACAAACCGTGTATGATGTAAAAGCACTGAGACCGAATTCACTTAACATTCTTCTGATGTTCTACCTATTTCTAGTCTGCATTCTGGTCCTGTCTTCATGTTACATGGCTTTCAAGATAATATCTCTGGAAGAGAGGCTAGTGTCTCTCGGCTCCTTGGCTGAGTTCTCTCACAATAGAGATGACTATCACAGCCTTTATACTGAGGATACATCTGAGATTTATACTATTCTCTCAGTGAACCTTGTGAAGTTGGAAAAgATTCAAAGAAACCTACAGAAACTACTGGAGGACACTTAATGATGTTAAATGGTAAATAATTGCTAATCAGTGGCAGACAACAAAGACTAAATGTCAACAGCAGACCCACAAAGAGCACAGACATGGTGTGGGAGTTAGTGTATTTCTCTTAattcaaaaaatatgtttatacatAGTTTGTGCatatgtattttactgtaagattttacaaaaaaaactgtgaaaaaactcTTTCTTgtctcattttgttttttttacaaagttgAGTTGTGACTGGTGGCTGCATTATGCAAACACAAGAGCTTGGTAATTGAGATCCTGATTAATTATTGATCTAAGTAATGAAGTAATCATGAAATAAAGATTAGTTGGTCCAgtgttttcttttgcttaagGAAGAAATGTGTATTGTTTATTACTGAATGGTTTTGACAAGTGCAATATTTCTGTTTGATCCAAATGAAATAGAACTGTATTATAAGTTAAGGATGTATAAAGATGTTGTCATATAACACAGTATAATTTAAAATACCTCAAAATGGTAGTCATGCAATattgtatatgtaaatataatgtCAGTTAATGTCAGTAAGAACTTTCTGTAAATGTCAGTATTTACTTTTTGGATATGTGCCTTACTTTGAAATAAATCTCAGCACATGTGAAATGA

Function

NR:

description
PREDICTED: GRAM domain-containing protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260765.3 False 1998 mRNA 0.38 14 25510629 25520226
XM_007260767.3 True 2204 mRNA 0.39 14 25510629 25517591
XM_015608712.2 False 1878 mRNA 0.38 13 25510629 25520226

Neighbor

gene id symbol gene type direction distance location
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 5083 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 26645 25473885 ~ 25483984 (-)
cep120 cep120,zgc:163014,LOC107712640 coding downstream 38663 25451112 ~ 25471966 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding downstream 119922 25385690 ~ 25390707 (-)
mtpap NA coding downstream 411525 25071454 ~ 25099104 (-)
LOC103036837 NA coding upstream 11834 25532060 ~ 25540399 (-)
LOC103035302 NA coding upstream 21080 25541306 ~ 25544527 (-)
lrrc2 lrrc2 coding upstream 91896 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 260203 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 574885 26095111 ~ 26529204 (-)
G54358 snx2 non-coding downstream 163932 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 167216 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 218655 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 284426 25225020 ~ 25226203 (-)
G54276 NA non-coding downstream 698002 24810820 ~ 24812627 (-)
G54448 NA non-coding upstream 3878 25524104 ~ 25525169 (-)
trnak-uuu NA non-coding upstream 46048 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 46915 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 47167 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 47419 25567645 ~ 25567717 (-)
jcad NA other downstream 512509 24950612 ~ 24998120 (-)
svil NA other downstream 590039 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1158693 24341400 ~ 24351936 (-)
G53996 NA other downstream 2418654 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4691220 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 29124 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1038180 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1053174 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1240906 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1646460 27166686 ~ 27168510 (-)

Expression


Co-expression Network