LOC103036837


Basic Information

Item Value
gene id LOC103036837
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 25532060 ~ 25540399 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007260769.2
tttttttttttttagataatgttaaattctaaaaaaaagaaaaagaaatcatgCAATAAAACATGCAGAAAGGTTGTGTATtagttttatttcttaaagagTATTAACAACTGTACAAAAGACTGTAAcacaaagaaaatatttataaaatactgttttacatGTCTTTCATTCTATGTATTTTACATGTAAGAATTGTTAAGTTTATTatgtaattgtgtaaaaaaaacatttgtttttgtcagcagattcattttaaaagttGAGGATGAAGAATAGACACGCTTTCTGTTTGCTTCTCTGTTTGGTCCACCTATGTCATTATGGATTTGCCCAGTGGCATGGAGGAAAGCAAGTGAAAAGTTACAGTTATAAAGaATTTACTGTGACTGTTCGAGACCTGAAACAATGTGATGGACAGGacaatgtttgtgttttgcacAATAGAGACTGCAACTGTATGCTATCACCTCGTACcgACCTGTTCTTGAACATCTCATGTCAGTATCTTGTCTACAAGAAAATGTTTGGGTGCAAAtggatttatttaaatgatgtcAGGACTGAGACgatacattcattcattttgagTCAAACTACAGAGATCATTCACTGTCCATCCATGTTCAGTTCTGCTGGGGAATTTAATTTAACCATAAAGACAAAGGATCCCGTCAACAAAATGGAAACATGTTCAGAAGTCTACCCAGTCTCTATTGGAAAAATAACTCAGGCTCCACAACCTACTATCACATCAGTGCGGGTGGGAAAGTCATCACTGAATGTAACATGGACCACTAAATGGTTCACCAAAACATGTAAGATACATCTCAAACAGTCCACCATGGAACAACTGATAGAGGTgtctgttaaaaatgaaaatgaaaatggtgATGAATTTTTTCATGTTATTGATGGTTTGCAAGCCTTTAGCCAGTACAATCTTACTATTGCCTGCAAAGCTTATGGCCTGTGGAGTGAATGGAGTGGCGAATTTCAAAGAATGACATTAGAGGATGcaCCAACTGTATCACCAAAAGTCAGTTACTGTGTTGAGTCGttagacaaaatattagaaACTCAAAAGGTGTTACTTTTATGGAAGGCTttagagaaaaatgaagctcgaggAGTCATTCTTGGATATGAAGTGACCTATACATCAATCACGCATCCATCTCCAGAGAGAATCAACACCACTGACCTGAAGGCTGAGCTAGTGGTGGCTGCAGGAGACTACAACATATCTCTGAGGGCCTTTACCAGTGCTGGACCATCTCCTCCTCGTCATGTTCCAATcagcactgttttctgtgaaaGTTTGCCTAGAGTAAAAGGACTCTGGGCTATCAGTAATGCAGATTCACTGAATATTCAATGGGAAATGGATCAGAGAGCAGCAAGTGAGACTGAATTTGCTATTGAGCTGATTTCTTCTGGTGATGCTTCCTCTAAGCAGTGGAAAAGAGTTAATGGCAGTGCATTTTCAACTGTTCTGAAAGGGAGTATCAAACAATTAGAAACCTACAATATCAGAGTGTATCCCCTTTCTGGCGGTCTCTGTGGACCTCCAGAGTCAATCCAGGCCAGCTTAGAAAGTGGCACCCTCTTAGAAATCGTTCAGCTCCAACGTCTGAACATGACAAAGACATCAGTGACAGTTCAATGGGTGTGGCAAAAAAAGGTCAGCAGCACTAATGTCCTTCAGTACAGAGTCACATTAGTAGGTGGACCCGAAACAAGATCAATAGTAATTTTCCCACATCAATGGCAACATTCATTCCACAAACTACAGGCATATGTCAAATACTCAGTCTATATCTATGCAGAAACTGCAGCTGGTCATttttcaaaggaacacattgaGTTTACCACACCTCTTTTAGAAAATGATGAAGTAGTAAAAGCTGCTCTTCCGGTGATACTTCTGATTATTGGATTTGCCATTTTATCAATTCTCTCCAGAACAATTTATAAAGACTACTTCTTCCCCAACATTGCTAATCCTGGCCATAGTCTCATTGGACATTGGCTGCTAAATCCTCTACATGAGAGAGCTGCCGTTGTGAGTGTGTTGAAACTGGAGGATTTCTCAGTGACCAATCATCTCACTGAGAAGTGTCTAATACAAACAGAGGACCAAAAGTCTTTAGAACAGGAGGAGTTTGATGAACATATGACTCTCTCTGATATGTCCAAGACATACCCCGATATTGATCCAGTGGAGAATTCTGATGGTTTGGAAAATTCTCTGACTCGCTCTCCTGCTCTTACTGAGTATGTTGATTTGCCTTCAATTCCTGATAATTTTGATTATGTTGGAAATGATCATATTCCTGATAACTAACTTACTGTTTGTAATTCCAACTGAGATAGAAGTGACTTTTCTGTAACTGTGAGAGCAACCTTTATAGCAGCTATATAACTGGATTATATTGTTGACTTATGCACCTTTAGGAAATGTAGCGCTTGTATACCAATCTTTTTTTAAccagtcttttttctttttttgtgtgtgtaataatactCTTTAAGTATCACTAACAGTGATTTTAGTGAAACCGcagtataaatgtaaataaatat

Function

GO:

id name namespace
GO:0016064 immunoglobulin mediated immune response biological_process
GO:0002250 adaptive immune response biological_process
GO:0008152 metabolic process biological_process
GO:0072376 protein activation cascade biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0006956 complement activation biological_process
GO:0006958 complement activation, classical pathway biological_process
GO:0006959 humoral immune response biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0002682 regulation of immune system process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0002443 leukocyte mediated immunity biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0002449 lymphocyte mediated immunity biological_process
GO:0002455 humoral immune response mediated by circulating immunoglobulin biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0002460 adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0019724 B cell mediated immunity biological_process

KEGG:

id description
ko03010 Ribosome
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007260769.2 True 2586 mRNA 0.38 16 25532060 25540399

Neighbor

gene id symbol gene type direction distance location
LOC103035606 LOC108441999 coding downstream 11834 25510629 ~ 25520226 (-)
LOC103037139 LOC108442001,LOC108265961,LOC107697601,LOC107712558,LOC105890695 coding downstream 26514 25486562 ~ 25505546 (-)
LOC103046226 znf608 coding downstream 48076 25473885 ~ 25483984 (-)
cep120 cep120,zgc:163014,LOC107712640 coding downstream 60094 25451112 ~ 25471966 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding downstream 141353 25385690 ~ 25390707 (-)
LOC103035302 NA coding upstream 907 25541306 ~ 25544527 (-)
lrrc2 lrrc2 coding upstream 71723 25612122 ~ 25621265 (-)
efna5 efna5,LOC108265807,LOC108430322,LOC106585191,LOC100702629 coding upstream 240030 25780429 ~ 25966065 (-)
fbxl17 fbxl17,LOC107570989 coding upstream 554712 26095111 ~ 26529204 (-)
ubox5 NA coding upstream 1053941 26594340 ~ 26599322 (-)
G54448 NA non-coding downstream 6891 25524104 ~ 25525169 (-)
G54358 snx2 non-coding downstream 185363 25333400 ~ 25346697 (-)
G54360 NA non-coding downstream 188647 25341697 ~ 25343413 (-)
LOC111192641 NA non-coding downstream 240086 25099176 ~ 25291974 (-)
G54338 NA non-coding downstream 305857 25225020 ~ 25226203 (-)
trnak-uuu NA non-coding upstream 25875 25566274 ~ 25566346 (-)
trnak-uuu_1 NA non-coding upstream 26742 25567141 ~ 25567213 (-)
trnak-uuu_2 NA non-coding upstream 26994 25567393 ~ 25567465 (-)
trnak-uuu_3 NA non-coding upstream 27246 25567645 ~ 25567717 (-)
trnak-uuu_4 NA non-coding upstream 27498 25567897 ~ 25567969 (-)
jcad NA other downstream 533940 24950612 ~ 24998120 (-)
svil NA other downstream 611470 24786251 ~ 24920590 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other downstream 1180124 24341400 ~ 24351936 (-)
G53996 NA other downstream 2440085 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 4712651 20817839 ~ 20819409 (-)
fam240a LOC108441996 other upstream 8951 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 1018007 26558406 ~ 26569939 (-)
ccl28 NA other upstream 1033001 26573400 ~ 26576425 (-)
LOC103024953 rnf165b,rnf165,LOC108430336,LOC108265796,LOC107726876,LOC107569673,LOC107712483 other upstream 1220733 26761132 ~ 26779714 (-)
G54854 dhx37 other upstream 1626287 27166686 ~ 27168510 (-)

Expression


Co-expression Network